RetrogeneDB ID: | retro_pcap_35 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_1649:15917..16283(-) | ||
Located in intron of: | ENSPCAG00000010159 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPCAG00000000761 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 58.14 % |
Parental protein coverage: | 95.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYAL-TGDEVKKICMQRFIKI |
GP.K.LK.VAA..HW.L..L..VFAP....G.HKLRECLPL..FLRNRLK.AL...D.V.KICMQRFIKI | |
Retrocopy | GPNKCLKNVAASEHWRLNRLASVFAP----GTHKLRECLPLTLFLRNRLKCAL>RRDKV-KICMQRFIKI |
Parental | DGKVRTDITYPAGFM-DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIF |
D.K.....TY..GF..DVIS..K..EN..L..DTK..FAVH.I.P....Y.LCK....F | |
Retrocopy | DHKRQYVVTYLSGFR<DVISFNKIRENICLVCDTKIHFAVHHIMPG*VTYRLCKIKILF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |