RetrogeneDB ID: | retro_lafr_1007 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_6:17970475..17971244(+) | ||
Located in intron of: | ENSLAFG00000005888 | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000028215 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSLAFG00000002654 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 69.81 % |
Parental protein coverage: | 99.24 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTG-DEVKKICMQRFIKI |
GP.K.LK.VAAPK.W.LDKLTGVFAP.PSTGPHKLRECL.LI.FLRN.LKYAL...DEVK.I.MQRF.KI | |
Retrocopy | GP*KCLKNVAAPKCWRLDKLTGVFAPHPSTGPHKLRECLALILFLRNSLKYALKR>DEVK-IYMQRFTKI |
Parental | D-GKVRTDITYPAGFM-DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCK-VRKIFVGTKGIPHL |
D.GKV..D..YPAGF..DVI.I...GENF.L..DTK.RFAV.RI.P....Y.LCK..RKI..GT.GIPHL | |
Retrocopy | DDGKVQADAAYPAGFL<DVIGINQMGENFHLTCDTKVRFAVYRIMPQ*MNYSLCK<IRKILGGTEGIPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANL-GRIGVITNRERHPGSFDVV |
V.H.A.TI..PDPLIKVNDTIQI.LET.K.T.FI.F...N.C.VTGG.NL.GRI.V.TNRER.P.SFDVV | |
Retrocopy | VNHIACTIYIPDPLIKVNDTIQINLETRKMTSFIRF---NMCTVTGGVNL<GRIDVSTNRERRPRSFDVV |
Parental | HVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
HVKDA.GNSF.T.LS.IF.IGKGNKP.ISLP....I..T.AE.RD..LAAKQS.G | |
Retrocopy | HVKDAGGNSFVTWLSSIFIIGKGNKP*ISLPLKQSIHVTTAEKRDNCLAAKQSNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |