RetrogeneDB ID: | retro_itri_291 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393282.1:5756076..5756622(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSSTOG00000028692 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 91.21 % |
Parental protein coverage: | 69.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIK |
ARGPKKHL.R..APKHWML.KLT.VFAPRPSTGPHKLRECLPLIIF.RNRLK.ALTGDEVKKICMQRFIK | |
Retrocopy | ARGPKKHLRRGGAPKHWMLNKLTRVFAPRPSTGPHKLRECLPLIIFVRNRLKFALTGDEVKKICMQRFIK |
Parental | IDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
IDGKVRT.I.YPAGFMDV.SIDKT.ENF.LIYDTKGRFAVHRITPEEAKYKLCKVRK.FVGTKGIPHLVT | |
Retrocopy | IDGKVRTNIIYPAGFMDVVSIDKTRENFHLIYDTKGRFAVHRITPEEAKYKLCKVRKLFVGTKGIPHLVT |
Parental | HDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMV |
HD.RTI.YPDPLIKVNDTIQ.DLETGKITDFIKFDTGNLCMV | |
Retrocopy | HDGRTIQYPDPLIKVNDTIQTDLETGKITDFIKFDTGNLCMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |