RetrogeneDB ID: | retro_itri_306 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393283.1:27223855..27224438(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSSTOG00000028692 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 81.54 % |
Parental protein coverage: | 73.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ARGPKKHLKR-VAAPKHWMLD-KLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF |
A..PKKHLK..VAAPK.WMLD.KLTGVFA..PSTGPHKLRE..PLIIFLRNR.KYALTGDEV..IC.Q.F | |
Retrocopy | AHSPKKHLKQWVAAPKYWMLD>KLTGVFASHPSTGPHKLREHFPLIIFLRNRVKYALTGDEVRQICIQHF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKIDGKV.TDITY...F.DVISID.TG.NF.LI.DTKG.FAVH.ITPE.AKY.LCKVR....G.KGIP.L | |
Retrocopy | IKIDGKVQTDITYHTSFIDVISIDETGKNFCLICDTKGHFAVHHITPEKAKYTLCKVRNYLCGHKGIPLL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGV |
VTHDARTI.YPDPLIKVNDTIQIDLETGKITDFIKFDTGN.CMVTGGANLGRIGV | |
Retrocopy | VTHDARTICYPDPLIKVNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |