RetrogeneDB ID: | retro_lafr_1081 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_67:1266728..1267513(+) | ||
Located in intron of: | ENSLAFG00000000126 | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000028910 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSLAFG00000002654 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 94.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ARGPKKHLKRVAAPKH-WMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
A.GPKKHLKRVAAPKH.WMLDKLTGVFAP.P.T.PHKLRECLPLIIFLRNRLKYAL.GDEVKKICMQRFI | |
Retrocopy | AHGPKKHLKRVAAPKH<WMLDKLTGVFAPCPFTSPHKLRECLPLIIFLRNRLKYALKGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKVRTDITYPAGFMDVISIDKTGENF.LIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKVRTDITYPAGFMDVISIDKTGENFHLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
THDARTIRYPD.LIKVNDTIQIDLET.K.TDFIKF.TGNLCMVTGGANLGRIGVITNRERHPGSFDVVH. | |
Retrocopy | THDARTIRYPDLLIKVNDTIQIDLETRKTTDFIKFNTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHM |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDANGNSFATRLSNIFVIGKGNKPWIS.PRGKGI.LTIAEERDKRLAAKQSSG | |
Retrocopy | KDANGNSFATRLSNIFVIGKGNKPWISPPRGKGIQLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |