RetrogeneDB ID: | retro_pvam_809 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_12060:38389..39031(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 80.09 % |
Parental protein coverage: | 81.37 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITTEE |
RNRLKYA.TGD.VKKICMQ.F.KI.GKV.TDVTY..GF.DVI.IDKT.ENF.L.YDTKG.FAVH..T.EE | |
Retrocopy | RNRLKYAITGD*VKKICMQQFVKINGKVQTDVTYLPGFIDVIGIDKTKENFHLIYDTKGQFAVH*FTPEE |
Parental | AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYP-DPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGA |
AKYKLCK.RKIFVGT.GIPHLVTH.A.TI....D.LIKVNDTI.IDLET.KITDFI.FD.GNLC..TGGA | |
Retrocopy | AKYKLCKGRKIFVGTIGIPHLVTHNAHTIHSS<DLLIKVNDTIWIDLETSKITDFIDFDIGNLCKMTGGA |
Parental | NLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNI-FVIGKGNKPWISLPRGKGIRLTIAEERDKRL |
NLGRIGV.TNRE.HPGSFDVVHVK.ANGNSFAT.LSNI.F.IGKGNKPWISLP....I.LTIAEERDKRL | |
Retrocopy | NLGRIGVLTNRETHPGSFDVVHVKGANGNSFATELSNI>FFIGKGNKPWISLPYRRDIFLTIAEERDKRL |
Parental | AAKQSS |
AAKQSS | |
Retrocopy | AAKQSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |