RetrogeneDB ID: | retro_mmus_904 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:115659012..115659636(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 67.76 % |
Parental protein coverage: | 99.52 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKAR |
MGKGDPN...GKMS.Y.FF.QT..EEH.KKHPD....F.EFSKKCS...KT.SAK.K.KF.DLAK.DKA. | |
Retrocopy | MGKGDPNNLWGKMSLYTFFMQTYWEEHTKKHPDLWGYFGEFSKKCSKTSKTLSAKKK*KFKDLAKNDKAC |
Parental | YDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQ-SAK |
.DRE.KNYV.PKGDKK.KKKDPN..KRP.SAFFLFCSE..PKIK.EHPGL.IG.TAKKL.EMWSEQ...K | |
Retrocopy | NDRELKNYVLPKGDKKRKKKDPNDQKRPLSAFFLFCSEQCPKIKSEHPGLFIGETAKKLVEMWSEQ<ICK |
Parental | DKQ-PYEQKAAKLKEKYE-KDIAAYRAKGKSEAG-KKGPGRPTGSKKKNE-PEDEEEEEEEEEEEDDEEE |
DKQ..YEQKAAKLK.KY..K.IA...AK.KS..G.KK.PGR.T.SK.KN....DEEE..E..EEE..EE. | |
Retrocopy | DKQ<KYEQKAAKLK*KYK<KEIASNHAKVKSAIG>KKSPGR*TISK*KND<SKDEEEDYEDKEEEKEEEK |
Parental | EEDE |
E..E | |
Retrocopy | ED*E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 2 .51 RPM |
SRP007412_testis | 0 .00 RPM | 37 .37 RPM |