RetrogeneDB ID: | retro_mmus_626 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:25833153..25833696(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 87.43 % |
Parental protein coverage: | 86.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKAR |
MGK.DPNK...KMSSYAFFVQT.REEHKKK.PDSSVNFAEFSKKCSERWKTMS.KEKSKF.DLA.SDKAR | |
Retrocopy | MGKDDPNKLWAKMSSYAFFVQTYREEHKKKQPDSSVNFAEFSKKCSERWKTMSSKEKSKFKDLANSDKAR |
Parental | YDREMKNYVPPKGDKKGKKK-DPNAPKRPPSAFFLFC-SENRPKIKIEHPGLSIGDTAKKLGEMWSEQSA |
YDREMKNYVPPKGDKKGKKK.DPNAPKRPPSA.FL...SENRPKIKIEH.GLSIGDT.KKLG.M.SEQS. | |
Retrocopy | YDREMKNYVPPKGDKKGKKK>DPNAPKRPPSASFLLV<SENRPKIKIEHSGLSIGDTVKKLGKMLSEQSV |
Parental | KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGS |
KDKQPYEQKAAKLKEKYEKDIA....KGKSEAGKKGPGRPTGS | |
Retrocopy | KDKQPYEQKAAKLKEKYEKDIAT*HTKGKSEAGKKGPGRPTGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .02 RPM | 8 .49 RPM |
SRP007412_liver | 0 .03 RPM | 2 .51 RPM |
SRP007412_testis | 0 .05 RPM | 37 .37 RPM |