RetrogeneDB ID: | retro_mmus_1974 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:130987983..130988490(+) | ||
Located in intron of: | ENSMUSG00000027312 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083953 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 73.71 % |
Parental protein coverage: | 80.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKAR |
MGKGDP.KPRGKMSSYA.FV.TC.EEHKKKHPD.SVNF.EFSKKCSERWKTMSAKEK.KFED.AK.DKAR | |
Retrocopy | MGKGDPKKPRGKMSSYALFVKTCWEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
Parental | YDREMKNYV--PPKGDK-KGKKKDPNAPKRPPSAFFLFCSENRPKIKIEH-PGLSIGDTAKKLGEM-WSE |
Y.REMK.Y...P..GD..K.....P..P..P.SA.FLFCSE..PKIK.EH.P.LSIGD.AKKLGEM.... | |
Retrocopy | YEREMKTYIPCPQTGDQ<KRSTRTPMHP-MPSSA-FLFCSEYLPKIKGEH<PSLSIGDVAKKLGEM<VNN |
Parental | QSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA |
..A.DKQP.E.KAAKLKEKYEKDIAAYRAKGK..A | |
Retrocopy | AAADDKQP*EKKAAKLKEKYEKDIAAYRAKGKPDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .04 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .02 RPM | 8 .49 RPM |
SRP007412_liver | 0 .03 RPM | 2 .51 RPM |
SRP007412_testis | 0 .05 RPM | 37 .37 RPM |