RetrogeneDB ID: | retro_mmus_3248 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:15682901..15683453(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 84.78 % |
Parental protein coverage: | 87.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKAR |
M.KGDPNKPRGKMSSYAFFVQTC.EEHKKKHPDSSVNFAEFSKKC.ERWKTMSA.EKSKFEDLAKSDKA. | |
Retrocopy | MDKGDPNKPRGKMSSYAFFVQTCWEEHKKKHPDSSVNFAEFSKKCFERWKTMSANEKSKFEDLAKSDKAG |
Parental | YDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKD |
YDREMKN.VPPKGDK.GKKKDPN..KR.PSAFF.FCSE..PKIK.EHP.LSIGDTAKKLG.MWSEQ.AKD | |
Retrocopy | YDREMKNNVPPKGDKTGKKKDPNVLKRLPSAFFMFCSEHCPKIKSEHPCLSIGDTAKKLGMMWSEQFAKD |
Parental | KQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK |
KQ..EQK.AKLKE..EKDIAAY...GKSE.GKKG.GRP.GSKKK | |
Retrocopy | KQLNEQKVAKLKETCEKDIAAYHGEGKSETGKKGSGRPVGSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 2 .51 RPM |
SRP007412_testis | 0 .14 RPM | 37 .37 RPM |