RetrogeneDB ID: | retro_mmus_2843 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:81840820..81841362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 89.01 % |
Parental protein coverage: | 86.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKGDPNKPRGKMSS-YAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKA |
MGKGDPNKP..KMSS..AFF.QTC.EEHKKKHPDSS...AEFSKK.SERW.TMSAKEKSKFEDLAKSDKA | |
Retrocopy | MGKGDPNKPCSKMSS<IAFFMQTCLEEHKKKHPDSSASLAEFSKK*SERWNTMSAKEKSKFEDLAKSDKA |
Parental | RYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAK |
RYDREMKNYVP.KGDKKGKKKDPNAPKRPPSAFFLFCSENRP.IKI.HPGLSIGDT.KKLG.MWSEQSAK | |
Retrocopy | RYDREMKNYVPSKGDKKGKKKDPNAPKRPPSAFFLFCSENRPEIKIDHPGLSIGDTSKKLGVMWSEQSAK |
Parental | DKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGS |
DKQPYEQKAAK.KEKYEKDIAA.RAKGKSEAGKKG..RPTGS | |
Retrocopy | DKQPYEQKAAKPKEKYEKDIAAFRAKGKSEAGKKGSDRPTGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 2 .51 RPM |
SRP007412_testis | 0 .00 RPM | 37 .37 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_124794 | 754 libraries | 299 libraries | 18 libraries | 1 library | 0 libraries |