RetrogeneDB ID: | retro_mmus_642 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:52119314..52119869(-) | ||
Located in intron of: | ENSMUSG00000019893 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000093563 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 69.31 % |
Parental protein coverage: | 88.57 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 3 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKAR |
MG..DPNK....MS...FF..T..EE..KKHP...VNFAEF.KK..ER.KTMSAKEKSKFEDLAKS..AR | |
Retrocopy | MG*RDPNKMWDRMS**VFFMHTYWEEDDKKHPNF*VNFAEF*KKLQER*KTMSAKEKSKFEDLAKSNNAR |
Parental | YDREMKNYVPPKGDKKGK-KKDPNAPKRPPSA-FFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSA |
YDREMK.Y.PP.G.KKGK.KKDPN.PKR...A.FF.FCSE..P.IK...P....GDTAKKLG..WSEQSA | |
Retrocopy | YDREMKDYIPPNGVKKGK>KKDPNVPKRLSFA>FFWFCSEY*PRIKSQYP--VFGDTAKKLGGTWSEQSA |
Parental | KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKK-GPGRPTGSKKKNE |
KDK..YE.KAAKLKEKYEKDIAA..AKGK.E..K..GPGR.TGSKKKNE | |
Retrocopy | KDK*LYEEKAAKLKEKYEKDIAANHAKGKGETRKN>GPGRLTGSKKKNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 2 .51 RPM |
SRP007412_testis | 0 .00 RPM | 37 .37 RPM |