RetrogeneDB ID: | retro_mmus_3426 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:20391777..20392218(+) | ||
Located in intron of: | ENSMUSG00000060090 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082855 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 89.8 % |
Parental protein coverage: | 70. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRP |
KKHPDSSVNF.EFSKKCSE.WKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRP | |
Retrocopy | KKHPDSSVNFTEFSKKCSEKWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRP |
Parental | PSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKS |
P.AFFLFCSEN.PKIKIEHPGLSIGD..KKLG.MW.EQSAK.KQP.EQKAAKLKEKYE..IAAY.AK.KS | |
Retrocopy | PFAFFLFCSENCPKIKIEHPGLSIGDPVKKLGAMWFEQSAKEKQPCEQKAAKLKEKYEQEIAAYCAKSKS |
Parental | EAGKKGP |
EAGKK.P | |
Retrocopy | EAGKKDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .09 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .02 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 2 .51 RPM |
SRP007412_testis | 0 .05 RPM | 37 .37 RPM |