RetrogeneDB ID: | retro_mmus_1477 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:65914958..65915483(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 72.78 % |
Parental protein coverage: | 84.29 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKH-PDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKA |
MGKGDP.KPR.KMSS.AFFV.TCRE.HKK.H.PD.SVNF.EFSKKCSERWKTMSAKEK.K.ED.AK.DKA | |
Retrocopy | MGKGDPKKPRDKMSS*AFFV*TCRE*HKK-H<PDVSVNFSEFSKKCSERWKTMSAKEKRKSEDMAKADKA |
Parental | RYDREMKNYVP-PK-GDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQS |
RY.REMK.Y.P.P..G..K.K.KDPNAPKRP.SAFFLFCS..RP.IK..HPGLSIGD.AKKLGEMWS... | |
Retrocopy | RYEREMKTYIPTPQ>GETKKKFKDPNAPKRPRSAFFLFCSGYRPQIKGKHPGLSIGDVAKKLGEMWSNTA |
Parental | AKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGR |
..DKQPYE..AAKLK.KYEK.IAA.R...KS....KG.G. | |
Retrocopy | TDDKQPYEKTAAKLK-KYEKNIAANR*R-KS*CSEKGCGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .02 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 2 .51 RPM |
SRP007412_testis | 0 .00 RPM | 37 .37 RPM |