Parental gene:

Hmgb2, ENSMUSG00000054717

Aliases:Hmgb2, C80539, HMG-2, Hmg2
Description:high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157]
Organism:Mouse (Mus musculus)
Coordinates:8:57511842..57515999(+)


>ENSMUSG00000054717
ATGGGCAAGGGTGACCCCAACAAGCCGCGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCGCGAGGAGCA
CAAGAAGAAGCATCCCGACTCGTCGGTGAACTTCGCCGAGTTCTCCAAGAAATGCTCCGAGAGATGGAAGACCATGTCTG
CAAAGGAAAAGTCCAAGTTTGAAGATTTGGCCAAGAGCGACAAAGCTCGTTATGACAGGGAGATGAAGAACTATGTTCCT
CCCAAAGGGGATAAGAAAGGAAAGAAAAAAGACCCCAATGCTCCGAAGAGACCACCGTCTGCCTTCTTCCTGTTTTGCTC
TGAAAATCGCCCAAAGATCAAAATTGAACACCCAGGCCTGTCTATTGGAGATACTGCGAAGAAACTGGGTGAGATGTGGT
CTGAGCAATCTGCCAAAGATAAACAACCGTATGAGCAGAAAGCAGCTAAACTAAAGGAGAAGTATGAAAAGGATATTGCT
GCATACCGTGCCAAGGGCAAAAGTGAAGCAGGAAAGAAGGGTCCTGGTAGGCCAACAGGCTCAAAGAAGAAGAACGAACC
AGAAGATGAGGAGGAGGAAGAAGAGGAGGAAGAGGAGGAAGATGACGAGGAAGAAGAGGAGGATGAAGAATAA

Library Parental gene expression (RPM)
SRP007412_brain 1 .89 RPM
SRP007412_cerebellum 1 .95 RPM
SRP007412_heart 4 .83 RPM
SRP007412_kidney 8 .49 RPM
SRP007412_liver 2 .51 RPM
SRP007412_testis 37 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015101 ortholog_one2one 1 retrogene
retro_btau_58,
Callithrix jacchus ENSCJAG00000005112 ortholog_one2one 2 retrogenes
retro_cjac_2555, retro_cjac_832,
Dasypus novemcinctus ENSDNOG00000019440 possible_ortholog 4 retrogenes
retro_dnov_1142, retro_dnov_1457, retro_dnov_454, retro_dnov_532,
Echinops telfairi ENSETEG00000010379 possible_ortholog 3 retrogenes
retro_etel_1474, retro_etel_1841, retro_etel_2023,
Echinops telfairi ENSETEG00000016379 possible_ortholog 1 retrogene
retro_etel_414,
Felis catus ENSFCAG00000004218 ortholog_one2one 2 retrogenes
retro_fcat_279, retro_fcat_52,
Homo sapiens ENSG00000164104 ortholog_one2one 1 retrogene
retro_hsap_3663,
Gorilla gorilla ENSGGOG00000015882 ortholog_one2one 1 retrogene
retro_ggor_2474,
Loxodonta africana ENSLAFG00000010417 ortholog_one2one 3 retrogenes
retro_lafr_1096, retro_lafr_1142, retro_lafr_595,
Macropus eugenii ENSMEUG00000002256 ortholog_one2one 3 retrogenes
retro_meug_1920, retro_meug_1989, retro_meug_550,
Myotis lucifugus ENSMLUG00000026303 ortholog_one2one 4 retrogenes
retro_mluc_1113, retro_mluc_1381, retro_mluc_1726, retro_mluc_2011,
Monodelphis domestica ENSMODG00000003527 ortholog_one2one 3 retrogenes
retro_mdom_1160, retro_mdom_1919, retro_mdom_69,
Mustela putorius furo ENSMPUG00000001919 ortholog_one2one 9 retrogenes
retro_mputfur_1134, retro_mputfur_1167, retro_mputfur_1379, retro_mputfur_1475, retro_mputfur_1631, retro_mputfur_1633, retro_mputfur_1644, retro_mputfur_940, retro_mputfur_989,
Mus musculus ENSMUSG00000015217 within_species_paralog 1 retrogene
retro_mmus_273,
Mus musculus ENSMUSG00000066551 other_paralog 129 retrogenes
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG00000006662 ortholog_one2one 3 retrogenes
retro_nleu_113, retro_nleu_517, retro_nleu_550,
Oryctolagus cuniculus ENSOCUG00000000074 ortholog_one2one 1 retrogene
retro_ocun_1829,
Pongo abelii ENSPPYG00000015204 ortholog_one2one 3 retrogenes
retro_pabe_297, retro_pabe_3005, retro_pabe_3380,
Pan troglodytes ENSPTRG00000016597 ortholog_one2one 3 retrogenes
retro_ptro_19, retro_ptro_2484, retro_ptro_2789,
Rattus norvegicus ENSRNOG00000013167 ortholog_one2many 2 retrogenes
retro_rnor_173, retro_rnor_54,
Ictidomys tridecemlineatus ENSSTOG00000023980 ortholog_one2one 2 retrogenes
retro_itri_1720, retro_itri_880,
Tursiops truncatus ENSTTRG00000015650 ortholog_one2one 1 retrogene
retro_ttru_1640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_461 68.49 67.62
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2. retro_mmus_626 87.43 86.19
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3. retro_mmus_642 69.31 88.57
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4. retro_mmus_796 74.43 82.86
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5. retro_mmus_861 74.87 87.14
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6. retro_mmus_901 66.14 59.52
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7. retro_mmus_902 67.72 59.52
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8. retro_mmus_904 67.76 99.52
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9. retro_mmus_905 66.92 60.95
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10. retro_mmus_1477 72.78 84.29
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11. retro_mmus_1745 92.20 66.67
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12. retro_mmus_1974 73.71 80.95
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13. retro_mmus_1975 79.87 69.52
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14. retro_mmus_2269 68.13 84.29
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15. retro_mmus_2527 92.35 86.19
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16. retro_mmus_2528 92.35 86.19
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17. retro_mmus_2529 92.35 86.19
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18. retro_mmus_2530 91.80 86.19
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19. retro_mmus_2531 90.71 86.19
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20. retro_mmus_2843 89.01 86.19
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21. retro_mmus_2884 71.67 82.86
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22. retro_mmus_3248 84.78 87.62
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23. retro_mmus_3426 89.80 70.00
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Download FASTA sequences of all ENSMUSG00000054717 retrocopies