RetrogeneDB ID: | retro_mmus_905 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:115774522..115774908(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb2 | ||
Ensembl ID: | ENSMUSG00000054717 | ||
Aliases: | Hmgb2, C80539, HMG-2, Hmg2 | ||
Description: | high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157] |
Percent Identity: | 66.92 % |
Parental protein coverage: | 60.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KEKSKFEDLAKSDKARYDREMKNYVP-PKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIG |
KEK.KF.DLAKSDK...DREMKNYVP.PK.........PN...RP.SAFFLF..E..PKIK.EHP.LSIG | |
Retrocopy | KEKYKFKDLAKSDKVCNDREMKNYVP>PKVXXXXXXXXPNDQERPMSAFFLFYYEQCPKIKSEHPVLSIG |
Parental | DTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAG-KKGPGRPTGSK |
.TAKKL.EMWSE..AKDKQ.YEQKAAKLK.KYE..I.A..AKGKS..G.KK.P..PT.SK | |
Retrocopy | ETAKKLVEMWSEKIAKDKQQYEQKAAKLK*KYETEIEANHAKGKSAIG>KKSPSKPTISK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .95 RPM |
SRP007412_heart | 0 .00 RPM | 4 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 2 .51 RPM |
SRP007412_testis | 0 .00 RPM | 37 .37 RPM |