Parental gene:

RPL26, ENSOCUG00000006538

Aliases:None
Description:ribosomal protein L26 [Source:HGNC Symbol;Acc:10327]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:19:10915723..10920715(+)


>ENSOCUG00000006538
ATGAAGTTCAATCCCTTTGTGACTTCTGATCGGAGCAAGAACCGGAAAAGGCATTTCAATGCCCCTTCCCACATTCGCCG
GAAGATTATGTCTTCTCCCCTTTCCAAAGAGCTGAGACAGAAGTACAACGTGCGATCCATGCCTATCCGAAAGGATGATG
AAGTGCAAGTTGTGCGAGGACACTACAAGGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCATC
TACATTGAGCGGGTGCAGCGAGAAAAGGCCAATGGCACAACTGTCCATGTGGGCATTCACCCCAGCAAGGTGGTTATCAC
TAGGCTAAAGCTGGACAAAGACCGCAAAAAGATCCTGGAACGGAAAGCCAAGTCTCGTCAAGTAGGAAAGGAGAAGGGCA
AATACAAGGAAGAAACTATTGAGAAGATGCAAGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 121 .58 RPM
SRP017611_kidney 294 .24 RPM
SRP017611_liver 44 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002453 possible_ortholog 7 retrogenes
retro_amel_1175, retro_amel_1535, retro_amel_1885, retro_amel_1934, retro_amel_360, retro_amel_499, retro_amel_900,
Bos taurus ENSBTAG00000012344 ortholog_one2one 2 retrogenes
retro_btau_1090, retro_btau_230,
Callithrix jacchus ENSCJAG00000014372 possible_ortholog 8 retrogenes
retro_cjac_110, retro_cjac_119, retro_cjac_240, retro_cjac_250, retro_cjac_270, retro_cjac_297, retro_cjac_321, retro_cjac_362,
Gorilla gorilla ENSGGOG00000023944 possible_ortholog 4 retrogenes
retro_ggor_2565, retro_ggor_270, retro_ggor_51, retro_ggor_974,
Myotis lucifugus ENSMLUG00000002176 possible_ortholog 1 retrogene
retro_mluc_232,
Macaca mulatta ENSMMUG00000003448 possible_ortholog 22 retrogenes
retro_mmul_1117, retro_mmul_1361, retro_mmul_1398, retro_mmul_1497, retro_mmul_1710, retro_mmul_1773, retro_mmul_1899, retro_mmul_1986, retro_mmul_2052, retro_mmul_2163, retro_mmul_2332, retro_mmul_2344, retro_mmul_325, retro_mmul_360, retro_mmul_398, retro_mmul_405, retro_mmul_448, retro_mmul_548, retro_mmul_805, retro_mmul_903, retro_mmul_920, retro_mmul_992,
Monodelphis domestica ENSMODG00000006201 possible_ortholog 2 retrogenes
retro_mdom_36, retro_mdom_64,
Mus musculus ENSMUSG00000060938 ortholog_one2one 21 retrogenes
retro_mmus_1325, retro_mmus_1444, retro_mmus_1506, retro_mmus_1642, retro_mmus_1866, retro_mmus_1978, retro_mmus_2011, retro_mmus_2218, retro_mmus_2435, retro_mmus_2540, retro_mmus_2673, retro_mmus_3078, retro_mmus_3174, retro_mmus_320, retro_mmus_3270, retro_mmus_3291, retro_mmus_3361, retro_mmus_384, retro_mmus_556, retro_mmus_900, retro_mmus_939,
Nomascus leucogenys ENSNLEG00000009981 possible_ortholog 1 retrogene
retro_nleu_76,
Oryctolagus cuniculus ENSOCUG00000006172 within_species_paralog 4 retrogenes
retro_ocun_1015, retro_ocun_1224, retro_ocun_354, retro_ocun_845,
Pan troglodytes ENSPTRG00000008742 possible_ortholog 3 retrogenes
retro_ptro_1546, retro_ptro_2510, retro_ptro_73,
Rattus norvegicus ENSRNOG00000004214 possible_ortholog 3 retrogenes
retro_rnor_213, retro_rnor_260, retro_rnor_273,
Sarcophilus harrisii ENSSHAG00000006890 possible_ortholog 1 retrogene
retro_shar_458,
Sus scrofa ENSSSCG00000028850 possible_ortholog 9 retrogenes
retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_529 65.31 100.00
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2. retro_ocun_542 85.52 100.00
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3. retro_ocun_589 69.67 83.45
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4. retro_ocun_803 64.96 79.31
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5. retro_ocun_1125 52.50 82.07
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6. retro_ocun_1290 94.52 100.00
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7. retro_ocun_1442 58.39 100.00
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8. retro_ocun_1484 71.05 78.62
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9. retro_ocun_1515 78.08 100.00
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10. retro_ocun_1621 94.52 100.00
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11. retro_ocun_1917 70.75 100.00
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Download FASTA sequences of all ENSOCUG00000006538 retrocopies