RetrogeneDB ID: | retro_ocun_1484 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:82316610..82316952(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSOCUG00000006538 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 71.05 % |
Parental protein coverage: | 78.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP |
S..S..LRQKYN..SM.I.KDDE.Q.V..HYKGQQ.GKVV.VYRKK..IY.E.V.R.KA.GTTVHVGIHP | |
Retrocopy | SNVSNVLRQKYNMQSMSI*KDDEEQIVQTHYKGQQNGKVVWVYRKKCFIYTEHVWRDKADGTTVHVGIHP |
Parental | SKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE |
SKVVI.RLKLDKD.KKILE.K.K...V.KEK.K.KEE.IEKM.E | |
Retrocopy | SKVVIIRLKLDKDHKKILEWKSKFHLVAKEKDKHKEEAIEKMKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 294 .24 RPM |
SRP017611_liver | 0 .00 RPM | 44 .86 RPM |