RetrogeneDB ID: | retro_ocun_529 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:116105270..116105700(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSOCUG00000006538 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 65.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MK.NPFVTSD..K..KRHFNAPS...RKIMSS.LSKELR..YN...M.I.KD.EVQVVR..YK.QQ.GKV | |
Retrocopy | MKSNPFVTSD*RKK*KRHFNAPSCVFRKIMSSLLSKELR*RYNM*PMTIQKDGEVQVVR*CYKAQQVGKV |
Parental | VQVYRKKYVIYIERVQRE-KANGTTVHVGIHPSKVVITRLKLD-KDRKKILERKAKSRQVGKEKGKYKEE |
V..YRKKYVIYIE.VQ.E.KANG.TVHVGI.PS....TRL.L.....K..L..K.....V..EKGKYKEE | |
Retrocopy | V*IYRKKYVIYIEHVQ*E<KANGITVHVGIYPSQLLATRL*LE<ENCKRSLSGKP-FHHVREEKGKYKEE |
Parental | TIEKMQE |
TI..MQE | |
Retrocopy | TIARMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 294 .24 RPM |
SRP017611_liver | 0 .00 RPM | 44 .86 RPM |