RetrogeneDB ID: | retro_ocun_1917 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:21111185..21111614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSOCUG00000006538 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 70.75 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKF.PFVTSD.SKN.K.HFN.PSHI.RKIMS..L.K.LRQKY.VR.MPI.K..EVQV..GH.K..QIG.. | |
Retrocopy | MKFSPFVTSD*SKNQKKHFNVPSHIHRKIMSLHLPKQLRQKYKVRTMPI*KGNEVQVMLGHCKC*QIG-I |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDR-KKILERKAKSRQVGKEKGKYKE-E |
.QVYRKKY....E..QREKANGT.VHVGIHPS..V.TRLKL.KD..KKILE.K.KS.QVGK.K.KYKE.E | |
Retrocopy | AQVYRKKYILCTEWMQREKANGTNVHVGIHPSNAVFTRLKLHKDH>KKILEQKVKSCQVGK-KSKYKE<E |
Parental | TIEKMQE |
TIE.MQE | |
Retrocopy | TIENMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 294 .24 RPM |
SRP017611_liver | 0 .00 RPM | 44 .86 RPM |