RetrogeneDB ID: | retro_opri_558 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_17143:18865..19155(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSOPRG00000010734 | ||
Aliases: | None | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 67.35 % |
Parental protein coverage: | 53.01 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | PSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQN |
PSQV.QNY.....A..N..INLEL.AS.V.L.MSY.F..DDV.LKNFAKYF...SHEEREH.EKLMKL.N | |
Retrocopy | PSQVNQNYT*A*KATVNCHINLELHASCVCLAMSYCFNCDDVTLKNFAKYFFLWSHEEREHTEKLMKL*N |
Parental | QRGGRIFL-QDIKKPDRDDWENGLNAME |
Q....IFL.QDIKKPD.DDWE..LNA.E | |
Retrocopy | Q*RR*IFL<QDIKKPDSDDWETRLNAVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |