Parental gene:

ENSDNOG00000017128

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_64044:49788..50640(+)


>ENSDNOG00000017128
TCTTACTACTTTGACCGTGATGATGTGGCTTTGAAGAACTTTGCCAAATATTTTCTTCACCAATCTCATGAGGAGAGGGA
ACATGCTGAGAAACTAATGAAGCTGCAGAACCAGCGAGGCGGCAGAATCTTCCTTCAGGATATCAAGAAACCAGAACGAG
ATGACTGGGAGAGCGGATTGAATGCAATGGAGTGTGCATTACACTTGGAAAAAAGGGTGAATCAGTCACTACTGGAACTG
CACAAACTGGCTACTGACAAAAATGACCCCCATTTGTGTGACTTCATTGAGACCCATTACCTGAATGAGCAGGTGAAGTC
CATCAAAGAACTGGGTGACTACGTAACCAACCTGCGCAAGATGGGGGCCCCGGATTCTGGCTTGGCAGAGTATCTCTTTG
ACAAGCACACTCTGGGAAGCAGTGATGAGAGCTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 567 .85 RPM
SRP012922_cerebellum 303 .39 RPM
SRP012922_heart 263 .36 RPM
SRP012922_kidney 890 .66 RPM
SRP012922_liver 543 .68 RPM
SRP012922_lung 953 .15 RPM
SRP012922_quadricep_muscle 198 .18 RPM
SRP012922_spleen 1034 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016831 possible_ortholog 1 retrogene
retro_amel_115,
Bos taurus ENSBTAG00000011184 possible_ortholog 10 retrogenes
retro_btau_1151, retro_btau_121, retro_btau_1255, retro_btau_1473, retro_btau_1708, retro_btau_1745, retro_btau_256, retro_btau_595, retro_btau_673, retro_btau_959,
Canis familiaris ENSCAFG00000015901 possible_ortholog 1 retrogene
retro_cfam_150,
Callithrix jacchus ENSCJAG00000019089 possible_ortholog 16 retrogenes
retro_cjac_1570, retro_cjac_1634, retro_cjac_2115, retro_cjac_2233, retro_cjac_230, retro_cjac_232, retro_cjac_2320, retro_cjac_2531, retro_cjac_278, retro_cjac_2843, retro_cjac_2857, retro_cjac_485, retro_cjac_519, retro_cjac_699, retro_cjac_767, retro_cjac_804,
Cavia porcellus ENSCPOG00000026586 possible_ortholog 3 retrogenes
retro_cpor_1309, retro_cpor_15, retro_cpor_157,
Dasypus novemcinctus ENSDNOG00000002455 other_paralog 9 retrogenes
retro_dnov_1096, retro_dnov_1135, retro_dnov_1177, retro_dnov_1737, retro_dnov_2006, retro_dnov_2352, retro_dnov_2678, retro_dnov_473, retro_dnov_993,
Dasypus novemcinctus ENSDNOG00000004126 other_paralog 5 retrogenes
retro_dnov_1263, retro_dnov_1490, retro_dnov_1760, retro_dnov_2329, retro_dnov_299,
Dasypus novemcinctus ENSDNOG00000005577 other_paralog 36 retrogenes
retro_dnov_103, retro_dnov_1164, retro_dnov_1215, retro_dnov_130, retro_dnov_1382, retro_dnov_1441, retro_dnov_1515, retro_dnov_1568, retro_dnov_1657, retro_dnov_1812, retro_dnov_1815, retro_dnov_1918, retro_dnov_1991, retro_dnov_2014, retro_dnov_2134, retro_dnov_2187, retro_dnov_236, retro_dnov_2376, retro_dnov_2379, retro_dnov_247, retro_dnov_2575, retro_dnov_2658, retro_dnov_2667, retro_dnov_285, retro_dnov_305, retro_dnov_432, retro_dnov_439, retro_dnov_543, retro_dnov_598, retro_dnov_642, retro_dnov_807, retro_dnov_841, retro_dnov_846, retro_dnov_849, retro_dnov_861, retro_dnov_897,
Dasypus novemcinctus ENSDNOG00000007848 other_paralog 2 retrogenes
retro_dnov_1049, retro_dnov_1476,
Dasypus novemcinctus ENSDNOG00000016683 other_paralog 8 retrogenes
retro_dnov_1134, retro_dnov_1329, retro_dnov_2023, retro_dnov_2194, retro_dnov_2228, retro_dnov_56, retro_dnov_757, retro_dnov_886,
Felis catus ENSFCAG00000007382 possible_ortholog 1 retrogene
retro_fcat_887,
Homo sapiens ENSG00000167996 possible_ortholog 20 retrogenes
retro_hsap_1243, retro_hsap_139, retro_hsap_1432, retro_hsap_2240, retro_hsap_2351, retro_hsap_2662, retro_hsap_2835, retro_hsap_2985, retro_hsap_2996, retro_hsap_316, retro_hsap_3208, retro_hsap_3293, retro_hsap_3589, retro_hsap_4083, retro_hsap_4232, retro_hsap_4671, retro_hsap_484, retro_hsap_81, retro_hsap_87, retro_hsap_898,
Gorilla gorilla ENSGGOG00000027722 possible_ortholog 7 retrogenes
retro_ggor_1313, retro_ggor_153, retro_ggor_1671, retro_ggor_1858, retro_ggor_2835, retro_ggor_64, retro_ggor_726,
Latimeria chalumnae ENSLACG00000017426 ortholog_one2many 1 retrogene
retro_lcha_75,
Loxodonta africana ENSLAFG00000004824 ortholog_one2many 12 retrogenes
retro_lafr_106, retro_lafr_1080, retro_lafr_1129, retro_lafr_138, retro_lafr_321, retro_lafr_433, retro_lafr_523, retro_lafr_53, retro_lafr_624, retro_lafr_717, retro_lafr_760, retro_lafr_966,
Microcebus murinus ENSMICG00000005851 possible_ortholog 6 retrogenes
retro_mmur_1227, retro_mmur_1303, retro_mmur_1370, retro_mmur_1609, retro_mmur_392, retro_mmur_509,
Myotis lucifugus ENSMLUG00000025726 possible_ortholog 16 retrogenes
retro_mluc_1030, retro_mluc_1142, retro_mluc_1211, retro_mluc_1354, retro_mluc_1464, retro_mluc_1769, retro_mluc_1984, retro_mluc_2002, retro_mluc_2091, retro_mluc_212, retro_mluc_2635, retro_mluc_361, retro_mluc_532, retro_mluc_556, retro_mluc_850, retro_mluc_885,
Monodelphis domestica ENSMODG00000007582 ortholog_many2many 9 retrogenes
retro_mdom_1134, retro_mdom_122, retro_mdom_1294, retro_mdom_1407, retro_mdom_1742, retro_mdom_300, retro_mdom_564, retro_mdom_643, retro_mdom_809,
Mustela putorius furo ENSMPUG00000014030 possible_ortholog 3 retrogenes
retro_mputfur_1642, retro_mputfur_36, retro_mputfur_408,
Mus musculus ENSMUSG00000024661 ortholog_one2many 4 retrogenes
retro_mmus_2856, retro_mmus_3417, retro_mmus_3660, retro_mmus_45,
Nomascus leucogenys ENSNLEG00000003321 possible_ortholog 29 retrogenes
retro_nleu_1036, retro_nleu_1157, retro_nleu_136, retro_nleu_1411, retro_nleu_1503, retro_nleu_1532, retro_nleu_1732, retro_nleu_1886, retro_nleu_2049, retro_nleu_2143, retro_nleu_2162, retro_nleu_2163, retro_nleu_2281, retro_nleu_2356, retro_nleu_2357, retro_nleu_2358, retro_nleu_2359, retro_nleu_2360, retro_nleu_2361, retro_nleu_2417, retro_nleu_2433, retro_nleu_2962, retro_nleu_303, retro_nleu_383, retro_nleu_72, retro_nleu_738, retro_nleu_747, retro_nleu_78, retro_nleu_936,
Oryctolagus cuniculus ENSOCUG00000014108 ortholog_one2many 4 retrogenes
retro_ocun_1172, retro_ocun_1179, retro_ocun_1598, retro_ocun_93,
Otolemur garnettii ENSOGAG00000025354 possible_ortholog 9 retrogenes
retro_ogar_1065, retro_ogar_1198, retro_ogar_1518, retro_ogar_2010, retro_ogar_2099, retro_ogar_2349, retro_ogar_2661, retro_ogar_2747, retro_ogar_3380,
Ochotona princeps ENSOPRG00000010734 possible_ortholog 7 retrogenes
retro_opri_1219, retro_opri_292, retro_opri_558, retro_opri_689, retro_opri_816, retro_opri_818, retro_opri_936,
Procavia capensis ENSPCAG00000010377 ortholog_one2many 13 retrogenes
retro_pcap_177, retro_pcap_217, retro_pcap_248, retro_pcap_276, retro_pcap_344, retro_pcap_348, retro_pcap_374, retro_pcap_379, retro_pcap_383, retro_pcap_395, retro_pcap_447, retro_pcap_5, retro_pcap_62,
Pongo abelii ENSPPYG00000003173 possible_ortholog 12 retrogenes
retro_pabe_1034, retro_pabe_1186, retro_pabe_2410, retro_pabe_2483, retro_pabe_2484, retro_pabe_249, retro_pabe_3351, retro_pabe_3406, retro_pabe_35, retro_pabe_3713, retro_pabe_47, retro_pabe_479,
Pteropus vampyrus ENSPVAG00000013038 possible_ortholog 3 retrogenes
retro_pvam_1006, retro_pvam_136, retro_pvam_5,
Rattus norvegicus ENSRNOG00000022619 ortholog_one2many 9 retrogenes
retro_rnor_1197, retro_rnor_1280, retro_rnor_1356, retro_rnor_1832, retro_rnor_2060, retro_rnor_2163, retro_rnor_264, retro_rnor_427, retro_rnor_71,
Sus scrofa ENSSSCG00000014540 possible_ortholog 9 retrogenes
retro_sscr_1045, retro_sscr_168, retro_sscr_286, retro_sscr_359, retro_sscr_498, retro_sscr_581, retro_sscr_78, retro_sscr_906, retro_sscr_949,
Ictidomys tridecemlineatus ENSSTOG00000014521 possible_ortholog 1 retrogene
retro_itri_250,
Vicugna pacos ENSVPAG00000003956 possible_ortholog 6 retrogenes
retro_vpac_233, retro_vpac_300, retro_vpac_370, retro_vpac_505, retro_vpac_515, retro_vpac_643,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_52 89.73 100.00
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2. retro_dnov_55 76.70 70.83
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3. retro_dnov_61 81.08 75.00
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4. retro_dnov_110 84.85 90.97
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5. retro_dnov_162 92.36 100.00
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6. retro_dnov_189 69.78 93.75
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7. retro_dnov_197 67.88 93.75
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8. retro_dnov_220 98.20 75.69
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9. retro_dnov_242 67.59 100.00
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10. retro_dnov_304 62.30 83.33
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11. retro_dnov_383 86.32 81.25
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12. retro_dnov_409 92.41 100.00
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13. retro_dnov_422 64.38 99.31
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14. retro_dnov_471 77.69 82.64
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15. retro_dnov_517 96.55 100.00
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16. retro_dnov_589 63.06 75.00
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17. retro_dnov_661 94.52 100.00
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18. retro_dnov_675 85.31 99.31
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19. retro_dnov_722 95.17 100.00
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20. retro_dnov_726 72.92 98.61
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21. retro_dnov_810 67.39 95.14
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22. retro_dnov_864 87.39 81.94
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23. retro_dnov_890 86.99 100.00
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24. retro_dnov_994 71.19 78.47
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25. retro_dnov_1017 86.81 99.31
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26. retro_dnov_1074 63.70 99.31
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27. retro_dnov_1078 58.76 66.67
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28. retro_dnov_1179 90.34 100.00
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29. retro_dnov_1188 93.75 99.31
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30. retro_dnov_1196 92.36 100.00
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31. retro_dnov_1201 80.00 93.06
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32. retro_dnov_1205 73.02 86.11
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33. retro_dnov_1271 79.02 98.61
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34. retro_dnov_1352 98.62 100.00
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35. retro_dnov_1356 76.55 99.31
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36. retro_dnov_1369 67.27 75.69
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37. retro_dnov_1397 77.93 99.31
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38. retro_dnov_1415 90.07 97.92
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39. retro_dnov_1425 79.86 99.31
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40. retro_dnov_1446 93.75 99.31
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41. retro_dnov_1489 59.32 81.25
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42. retro_dnov_1526 90.97 100.00
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43. retro_dnov_1535 96.55 100.00
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44. retro_dnov_1554 76.51 100.00
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45. retro_dnov_1565 93.06 100.00
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46. retro_dnov_1627 92.36 100.00
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47. retro_dnov_1640 67.91 90.97
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48. retro_dnov_1777 81.94 99.31
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49. retro_dnov_1787 62.38 69.44
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50. retro_dnov_1792 81.95 91.67
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51. retro_dnov_1827 88.11 99.31
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52. retro_dnov_1851 90.28 100.00
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53. retro_dnov_1865 77.78 99.31
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54. retro_dnov_1875 69.06 94.44
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55. retro_dnov_2005 88.81 99.31
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56. retro_dnov_2065 84.73 90.28
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57. retro_dnov_2093 72.99 93.75
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58. retro_dnov_2097 91.72 100.00
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59. retro_dnov_2109 59.85 94.44
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60. retro_dnov_2124 69.17 90.28
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61. retro_dnov_2136 56.25 54.86
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62. retro_dnov_2154 65.85 84.03
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63. retro_dnov_2173 91.10 100.00
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64. retro_dnov_2216 63.11 83.33
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65. retro_dnov_2231 87.50 100.00
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66. retro_dnov_2241 76.06 97.22
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67. retro_dnov_2251 54.68 95.14
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68. retro_dnov_2356 93.10 100.00
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69. retro_dnov_2388 91.61 98.61
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70. retro_dnov_2399 58.25 69.44
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71. retro_dnov_2443 91.72 100.00
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72. retro_dnov_2444 92.41 100.00
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73. retro_dnov_2454 74.78 79.86
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74. retro_dnov_2476 89.51 98.61
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75. retro_dnov_2483 69.34 95.14
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76. retro_dnov_2489 61.19 90.97
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77. retro_dnov_2511 73.11 82.64
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78. retro_dnov_2528 69.40 90.28
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79. retro_dnov_2554 68.46 86.11
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80. retro_dnov_2579 78.01 96.53
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81. retro_dnov_2607 86.99 100.00
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82. retro_dnov_2626 55.07 95.14
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83. retro_dnov_2646 91.03 100.00
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Download FASTA sequences of all ENSDNOG00000017128 retrocopies