Parental gene:

FTH1, ENSOCUG00000014108

Aliases:None
Description:Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:P25915]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018717:2789009..2791550(+)


>ENSOCUG00000014108
GCCCGCAGGCCCTCGCCGCCGCTCCAGCTCCGTGCAGCCGCCGCCGCCGCCTCTCAGCCGCCCGCCATGACGTCCGCGTC
TTCTTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCCGCCATCAACCGCCAGATCAACCTGGAGCTCTACGCCT
CCTATGTCTACCTGTCCATGTCTTACTACTTTGACCGTGATGATGTGGCTTTGAAGAACTTTGCCAAATACTTCCTCCAC
CAGTCTCACGAGGAGAGGGAACACGCTGAGAAACTGATGAAGCTGCAGAACCAGCGAGGGGGCCGGATCTTCCTTCAGGA
CATCAAGAAACCAGAGTATGACGACTGGGAAAGTGGACTGAATGCAATGGAGTGCGCACTGCACCTGGAAAAAAGTGTGA
ATCAGTCACTGCTGGAACTGCACAAACTGGCCACGGACAAAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTAC
CTGAATGAGCAGGTGAAGTCCATCAAAGAACTGGGTGACCACGTAACCAACTTGCGCAAGATGGGAGCCCCCGAATCTGG
CATGGCAGAGTATCTCTTTGACAAGCACACCCTGGGACACAGTGATAACGAGAGCTAA

Library Parental gene expression (RPM)
SRP017611_liver 2630 .57 RPM
SRP017611_kidney 2287 .31 RPM
SRP017611_brain 1434 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016831 possible_ortholog 1 retrogene
Bos taurus ENSBTAG00000011184 possible_ortholog 10 retrogenes
Canis familiaris ENSCAFG00000015901 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000019089 possible_ortholog 16 retrogenes
Cavia porcellus ENSCPOG00000026586 possible_ortholog 3 retrogenes
Dasypus novemcinctus ENSDNOG00000017128 ortholog_one2many 83 retrogenes
Felis catus ENSFCAG00000007382 possible_ortholog 1 retrogene
Homo sapiens ENSG00000167996 possible_ortholog 20 retrogenes
Gorilla gorilla ENSGGOG00000027722 possible_ortholog 7 retrogenes
Latimeria chalumnae ENSLACG00000017426 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000004824 ortholog_many2many 12 retrogenes
Microcebus murinus ENSMICG00000005851 possible_ortholog 6 retrogenes
Myotis lucifugus ENSMLUG00000025726 possible_ortholog 16 retrogenes
Monodelphis domestica ENSMODG00000007582 ortholog_many2many 9 retrogenes
Mustela putorius furo ENSMPUG00000014030 possible_ortholog 3 retrogenes
Mus musculus ENSMUSG00000024661 ortholog_one2many 4 retrogenes
Nomascus leucogenys ENSNLEG00000003321 possible_ortholog 29 retrogenes
Oryctolagus cuniculus ENSOCUG00000000014 other_paralog 6 retrogenes
Otolemur garnettii ENSOGAG00000025354 possible_ortholog 9 retrogenes
Ochotona princeps ENSOPRG00000010734 possible_ortholog 7 retrogenes
Procavia capensis ENSPCAG00000010377 ortholog_one2many 13 retrogenes
Pongo abelii ENSPPYG00000003173 possible_ortholog 12 retrogenes
Pteropus vampyrus ENSPVAG00000013038 possible_ortholog 3 retrogenes
Rattus norvegicus ENSRNOG00000022619 ortholog_one2many 9 retrogenes
Sus scrofa ENSSSCG00000014540 possible_ortholog 9 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000014521 possible_ortholog 1 retrogene
Vicugna pacos ENSVPAG00000003956 possible_ortholog 6 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_93 79.65 83.90
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2. retro_ocun_1172 61.49 76.10
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3. retro_ocun_1179 51.35 53.17
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4. retro_ocun_1598 96.59 100.00
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Download FASTA sequences of all ENSOCUG00000014108 retrocopies