RetrogeneDB - Parental gene ENSCJAG00000019089 details

							
>ENSCJAG00000019089
ATGACGACCGCATCACCTTCGCAGGTGCGCCAGAACTACCACCAGGATTCAGAGGCCGCCATCAACCGCCAAATCAACTT

GGAGCTCTACGCCTCCTATGTTTACCTGTCCATGTCTTACTACTTTGACCGAGATGATGTGGCTTTGAAGAACTTTGCCA

AGTACTTTCTTCACCAGTCTCATGAGGAGAGGGAACATGCCGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGC

ATCTTCCTCCAGGATATCAAGAAACCAGACCATGATGACTGGGAGAGCGGGCTGAATGCGATGGAGTGTGCATTACATTT

GGAAAAAAATGTGAATCAGTCACTACTGGAACTGCACAAACTGGCCACTGACAAAAATGACCCCCATTTGTGTGACTTCA

TTGAGACGCATTACCTGAATGAGCAGGTGAAATCCATCAAAGAATTGGGTGACCACGTGACCAACTTGCGCAAGATGGGA

GCACCCCAATCTGGCTTGGCAGAATATCTCTTTGACAAGCACACCCTGGGAGACAGTGATAATGAAAGCTAA

Library	Parental gene expression (RPM)
SRP051959_spleen	160 .59 RPM
SRP051959_skeletal_muscle	30 .81 RPM
SRP051959_lymph_node	116 .62 RPM
SRP051959_lung	107 .40 RPM
SRP051959_liver	107 .98 RPM
SRP051959_kidney	88 .46 RPM
SRP051959_heart	81 .32 RPM
SRP051959_colon	64 .01 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000016831	possible_ortholog	1 retrogene	retro_amel_115,
Bos taurus	ENSBTAG00000011184	possible_ortholog	10 retrogenes	retro_btau_1151, retro_btau_121, retro_btau_1255, retro_btau_1473, retro_btau_1708, retro_btau_1745, retro_btau_256, retro_btau_595, retro_btau_673, retro_btau_959,
Canis familiaris	ENSCAFG00000015901	possible_ortholog	1 retrogene	retro_cfam_150,
Callithrix jacchus	ENSCJAG00000000250	other_paralog	13 retrogenes	retro_cjac_1171, retro_cjac_1208, retro_cjac_1264, retro_cjac_1643, retro_cjac_2272, retro_cjac_2780, retro_cjac_3113, retro_cjac_3254, retro_cjac_3879, retro_cjac_556, retro_cjac_60, retro_cjac_889, retro_cjac_997,
Cavia porcellus	ENSCPOG00000026586	possible_ortholog	3 retrogenes	retro_cpor_1309, retro_cpor_15, retro_cpor_157,
Dasypus novemcinctus	ENSDNOG00000017128	possible_ortholog	83 retrogenes	retro_dnov_1017, retro_dnov_1074, retro_dnov_1078, retro_dnov_110, retro_dnov_1179, retro_dnov_1188, retro_dnov_1196, retro_dnov_1201, retro_dnov_1205, retro_dnov_1271, retro_dnov_1352, retro_dnov_1356, retro_dnov_1369, retro_dnov_1397, retro_dnov_1415, retro_dnov_1425, retro_dnov_1446, retro_dnov_1489, retro_dnov_1526, retro_dnov_1535, retro_dnov_1554, retro_dnov_1565, retro_dnov_162, retro_dnov_1627, retro_dnov_1640, retro_dnov_1777, retro_dnov_1787, retro_dnov_1792, retro_dnov_1827, retro_dnov_1851, retro_dnov_1865, retro_dnov_1875, retro_dnov_189, retro_dnov_197, retro_dnov_2005, retro_dnov_2065, retro_dnov_2093, retro_dnov_2097, retro_dnov_2109, retro_dnov_2124, retro_dnov_2136, retro_dnov_2154, retro_dnov_2173, retro_dnov_220, retro_dnov_2216, retro_dnov_2231, retro_dnov_2241, retro_dnov_2251, retro_dnov_2356, retro_dnov_2388, retro_dnov_2399, retro_dnov_242, retro_dnov_2443, retro_dnov_2444, retro_dnov_2454, retro_dnov_2476, retro_dnov_2483, retro_dnov_2489, retro_dnov_2511, retro_dnov_2528, retro_dnov_2554, retro_dnov_2579, retro_dnov_2607, retro_dnov_2626, retro_dnov_2646, retro_dnov_304, retro_dnov_383, retro_dnov_409, retro_dnov_422, retro_dnov_471, retro_dnov_517, retro_dnov_52, retro_dnov_55, retro_dnov_589, retro_dnov_61, retro_dnov_661, retro_dnov_675, retro_dnov_722, retro_dnov_726, retro_dnov_810, retro_dnov_864, retro_dnov_890, retro_dnov_994,
Felis catus	ENSFCAG00000007382	possible_ortholog	1 retrogene	retro_fcat_887,
Homo sapiens	ENSG00000167996	ortholog_one2many	20 retrogenes	retro_hsap_1243, retro_hsap_139, retro_hsap_1432, retro_hsap_2240, retro_hsap_2351, retro_hsap_2662, retro_hsap_2835, retro_hsap_2985, retro_hsap_2996, retro_hsap_316, retro_hsap_3208, retro_hsap_3293, retro_hsap_3589, retro_hsap_4083, retro_hsap_4232, retro_hsap_4671, retro_hsap_484, retro_hsap_81, retro_hsap_87, retro_hsap_898,
Gorilla gorilla	ENSGGOG00000027722	ortholog_many2many	7 retrogenes	retro_ggor_1313, retro_ggor_153, retro_ggor_1671, retro_ggor_1858, retro_ggor_2835, retro_ggor_64, retro_ggor_726,
Latimeria chalumnae	ENSLACG00000017426	ortholog_one2many	1 retrogene	retro_lcha_75,
Loxodonta africana	ENSLAFG00000004824	possible_ortholog	12 retrogenes	retro_lafr_106, retro_lafr_1080, retro_lafr_1129, retro_lafr_138, retro_lafr_321, retro_lafr_433, retro_lafr_523, retro_lafr_53, retro_lafr_624, retro_lafr_717, retro_lafr_760, retro_lafr_966,
Microcebus murinus	ENSMICG00000005851	possible_ortholog	6 retrogenes	retro_mmur_1227, retro_mmur_1303, retro_mmur_1370, retro_mmur_1609, retro_mmur_392, retro_mmur_509,
Myotis lucifugus	ENSMLUG00000025726	possible_ortholog	16 retrogenes	retro_mluc_1030, retro_mluc_1142, retro_mluc_1211, retro_mluc_1354, retro_mluc_1464, retro_mluc_1769, retro_mluc_1984, retro_mluc_2002, retro_mluc_2091, retro_mluc_212, retro_mluc_2635, retro_mluc_361, retro_mluc_532, retro_mluc_556, retro_mluc_850, retro_mluc_885,
Monodelphis domestica	ENSMODG00000007582	ortholog_many2many	9 retrogenes	retro_mdom_1134, retro_mdom_122, retro_mdom_1294, retro_mdom_1407, retro_mdom_1742, retro_mdom_300, retro_mdom_564, retro_mdom_643, retro_mdom_809,
Mustela putorius furo	ENSMPUG00000014030	possible_ortholog	3 retrogenes	retro_mputfur_1642, retro_mputfur_36, retro_mputfur_408,
Mus musculus	ENSMUSG00000024661	ortholog_one2many	4 retrogenes	retro_mmus_2856, retro_mmus_3417, retro_mmus_3660, retro_mmus_45,
Nomascus leucogenys	ENSNLEG00000003321	ortholog_one2many	29 retrogenes	retro_nleu_1036, retro_nleu_1157, retro_nleu_136, retro_nleu_1411, retro_nleu_1503, retro_nleu_1532, retro_nleu_1732, retro_nleu_1886, retro_nleu_2049, retro_nleu_2143, retro_nleu_2162, retro_nleu_2163, retro_nleu_2281, retro_nleu_2356, retro_nleu_2357, retro_nleu_2358, retro_nleu_2359, retro_nleu_2360, retro_nleu_2361, retro_nleu_2417, retro_nleu_2433, retro_nleu_2962, retro_nleu_303, retro_nleu_383, retro_nleu_72, retro_nleu_738, retro_nleu_747, retro_nleu_78, retro_nleu_936,
Oryctolagus cuniculus	ENSOCUG00000014108	possible_ortholog	4 retrogenes	retro_ocun_1172, retro_ocun_1179, retro_ocun_1598, retro_ocun_93,
Otolemur garnettii	ENSOGAG00000025354	possible_ortholog	9 retrogenes	retro_ogar_1065, retro_ogar_1198, retro_ogar_1518, retro_ogar_2010, retro_ogar_2099, retro_ogar_2349, retro_ogar_2661, retro_ogar_2747, retro_ogar_3380,
Ochotona princeps	ENSOPRG00000010734	possible_ortholog	7 retrogenes	retro_opri_1219, retro_opri_292, retro_opri_558, retro_opri_689, retro_opri_816, retro_opri_818, retro_opri_936,
Procavia capensis	ENSPCAG00000010377	ortholog_one2many	13 retrogenes	retro_pcap_177, retro_pcap_217, retro_pcap_248, retro_pcap_276, retro_pcap_344, retro_pcap_348, retro_pcap_374, retro_pcap_379, retro_pcap_383, retro_pcap_395, retro_pcap_447, retro_pcap_5, retro_pcap_62,
Pongo abelii	ENSPPYG00000003173	ortholog_many2many	12 retrogenes	retro_pabe_1034, retro_pabe_1186, retro_pabe_2410, retro_pabe_2483, retro_pabe_2484, retro_pabe_249, retro_pabe_3351, retro_pabe_3406, retro_pabe_35, retro_pabe_3713, retro_pabe_47, retro_pabe_479,
Pteropus vampyrus	ENSPVAG00000013038	possible_ortholog	3 retrogenes	retro_pvam_1006, retro_pvam_136, retro_pvam_5,
Rattus norvegicus	ENSRNOG00000022619	ortholog_one2many	9 retrogenes	retro_rnor_1197, retro_rnor_1280, retro_rnor_1356, retro_rnor_1832, retro_rnor_2060, retro_rnor_2163, retro_rnor_264, retro_rnor_427, retro_rnor_71,
Sus scrofa	ENSSSCG00000014540	possible_ortholog	9 retrogenes	retro_sscr_1045, retro_sscr_168, retro_sscr_286, retro_sscr_359, retro_sscr_498, retro_sscr_581, retro_sscr_78, retro_sscr_906, retro_sscr_949,
Ictidomys tridecemlineatus	ENSSTOG00000014521	possible_ortholog	1 retrogene	retro_itri_250,
Vicugna pacos	ENSVPAG00000003956	possible_ortholog	6 retrogenes	retro_vpac_233, retro_vpac_300, retro_vpac_370, retro_vpac_505, retro_vpac_515, retro_vpac_643,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_230	97.18	96.72	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_232	59.56	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_278	59.89	96.72	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_485	86.89	99.45	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_519	92.75	74.86	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_699	92.39	98.91	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_767	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_804	77.33	92.35	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_1570	93.44	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_1634	59.84	67.76	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cjac_2115	92.93	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cjac_2233	69.34	74.32	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cjac_2320	89.13	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cjac_2531	85.25	100.00	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cjac_2843	98.91	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cjac_2857	79.35	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000019089 retrocopies

Parental gene:	ENSCJAG00000019089
Aliases:	None
Description:	Ferritin [Source:UniProtKB/TrEMBL;Acc:F7IMT8]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	11:117428231..117431515(-)

Parental gene:

ENSCJAG00000019089