RetrogeneDB ID: | retro_ocun_1172 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:104875782..104876251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSOCUG00000014108 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:P25915] |
Percent Identity: | 61.49 % |
Parental protein coverage: | 76.1 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 4 |
Parental | NRQINLELYASYVYLSMSYYFDR-DDVALKNF-AKYFLHQSHEEREHAEKLMKLQNQRGGRI-FLQDIKK |
..QIN..L.ASY..LSMSYYF....DVA.KN....YF..QSHEEREHAEKLMKLQNQ.GG.I..L..IKK | |
Retrocopy | HHQINIAL*ASYICLSMSYYFNL<NDVACKNW<GNYFIQQSHEEREHAEKLMKLQNQ*GG*I<LLWHIKK |
Parental | PEYDDWESGLNAMECALHLE-KSVNQSLLELHKLATD-KNDPHLCDFIETHYLNEQVKSIKELGDHVTNL |
...D..E..LNA.EC..HLE.KS..Q..LEL.KLATD...DPH.CDF.ETHYLNEQV.SIKE.G..V.N. | |
Retrocopy | SVCDSCETELNAVECTFHLEIKSTDQPVLELLKLATD>EKDPH*CDFTETHYLNEQVESIKESGENVAN* |
Parental | RKMGAPESGMAEYLFDKHTLG |
..M....SG...YLFD.H.LG | |
Retrocopy | L*MRPLHSGLVGYLFDTHILG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1434 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 2287 .31 RPM |
SRP017611_liver | 0 .00 RPM | 2630 .57 RPM |