RetrogeneDB ID: | retro_ocun_1179 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:141349705..141350030(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSOCUG00000014108 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:P25915] |
Percent Identity: | 51.35 % |
Parental protein coverage: | 53.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AAAAASQPPAMTSASSSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDR-DDVALKNFAKYFLHQ |
A.AA...........S.QV....HQ......N...NLEL..S..Y.S.S..FD......LKNFAKYFL.Q | |
Retrocopy | ALAASPHLSTVMTTLSVQVCWYCHQFMDTPVNLPFNLELHTSCIYVSSS*GFDH<HYMDLKNFAKYFLPQ |
Parental | SHEEREHAEKLMKLQNQRGGRIFLQDIKKPEYDDW-ESGLN |
SH.EREHAEKL.KLQNQ..G..FLQ..K.PE...W.ESGLN | |
Retrocopy | SHVEREHAEKLIKLQNQCVGQLFLQAVKRPELREW<ESGLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1434 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 2287 .31 RPM |
SRP017611_liver | 0 .00 RPM | 2630 .57 RPM |