RetrogeneDB ID: | retro_cfam_150 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 11:39037527..39038079(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000030465 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSCAFG00000015901 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:Q95MP7] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKL |
MTTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKL | |
Retrocopy | MTTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKL |
Parental | MKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLN |
MKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLN | |
Retrocopy | MKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLN |
Parental | EQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLGNSDNES |
EQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLGNSDNES | |
Retrocopy | EQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLGNSDNES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 131 .33 RPM | 200 .92 RPM |
SRP017611_brain | 53 .75 RPM | 308 .92 RPM |
SRP017611_kidney | 92 .25 RPM | 250 .94 RPM |
SRP017611_liver | 76 .79 RPM | 275 .84 RPM |