RetrogeneDB ID: | retro_cpor_1309 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_69:1123524..1123881(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSCPOG00000026586 | ||
Aliases: | None | ||
Description: | ferritin heavy chain [Source:RefSeq peptide;Acc:NP_001166318] |
Percent Identity: | 52.03 % |
Parental protein coverage: | 65.93 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | DRDDVALKNFAK-YFLHQSHEEREHAEKLMKLQNQ-RGGRIFLQDIKKPDRDDWENGLNAMECALHLEKS |
D.D..ALKNF.K..FL......R.H.EKLM.L.NQ.....IFLQ...K.D...W...LNA.EC.LHL.K. | |
Retrocopy | DYDNGALKNFPKSFFLQ*WNKHRQHSEKLMEL*NQ>EWSQIFLQKMNKGDGNHWDSRLNALECVLHLVKD |
Parental | VNQSLLELHKLATDK-NDPHLCDFIETHYLDEQVKAIKELGDHVTNLRKMGAP |
.NQSL.ELHKLA..K.NDPH.........L.EQ.K.IKEL....T.L.K.GAP | |
Retrocopy | MNQSLQELHKLAFNK<NDPHM--YY*DY*LNEQEKSIKELHGQFTKLHKIGAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 963 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 1695 .94 RPM |
SRP017611_liver | 0 .00 RPM | 1936 .77 RPM |
SRP040447_lung | 0 .00 RPM | 2921 .18 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1262 .96 RPM |