Parental gene: | ARL2BP, ENSPPYG00000007384 |
| Aliases: | None |
| Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5R9K8] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 16:44490964..44499524(+) |
>ENSPPYG00000007384
ATGGACGCCTTAGAAGAAGAGAGCTTTGCGCTGTCTTTCTCCTCCACCTCTGATGCAGAATTTGATGCTGTGGTTGGATA
TTTAGAGGACATTATCATGGATGACGAGTTCCAGTTATTACAGAGAAATTTCATGGACAAGTACTACCTGGAGTTTGAAG
ACACAGAAGAGAATAAACTCATCTACACACCTATTTTTAATGAATATATTTCTTTGGTAGAAAAATATATTGAAGAACAG
CTGCTGCAGCGGATTCCTGGGTTCAACATGGCAGCTTTCACCACAACATTACAGCACCATAAGGATGAAGTGGCTGGTGA
CATATTCGACATGCTGCTCACCTTCACAGATTTTCTGGCTTTTAAAGAAATGTTTTTGGACTACAGAGCAGAAAAAGAAG
GCCGAGGACTGGACTTAAGCAGTGGCTTAGTGGTGACTTCGTTGTGCAAATCATCTTCTCTGCCAGCTTCCCAGAACAAT
CTGCGGCACTAG
ATGGACGCCTTAGAAGAAGAGAGCTTTGCGCTGTCTTTCTCCTCCACCTCTGATGCAGAATTTGATGCTGTGGTTGGATA
TTTAGAGGACATTATCATGGATGACGAGTTCCAGTTATTACAGAGAAATTTCATGGACAAGTACTACCTGGAGTTTGAAG
ACACAGAAGAGAATAAACTCATCTACACACCTATTTTTAATGAATATATTTCTTTGGTAGAAAAATATATTGAAGAACAG
CTGCTGCAGCGGATTCCTGGGTTCAACATGGCAGCTTTCACCACAACATTACAGCACCATAAGGATGAAGTGGCTGGTGA
CATATTCGACATGCTGCTCACCTTCACAGATTTTCTGGCTTTTAAAGAAATGTTTTTGGACTACAGAGCAGAAAAAGAAG
GCCGAGGACTGGACTTAAGCAGTGGCTTAGTGGTGACTTCGTTGTGCAAATCATCTTCTCTGCCAGCTTCCCAGAACAAT
CTGCGGCACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 44 .34 RPM |
| SRP007412_cerebellum | 67 .25 RPM |
| SRP007412_heart | 17 .01 RPM |
| SRP007412_kidney | 20 .05 RPM |
| SRP007412_liver | 5 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000012116 | ortholog_one2many | 9 retrogenes | |
| Cavia porcellus | ENSCPOG00000011406 | ortholog_one2one | 5 retrogenes | |
| Equus caballus | ENSECAG00000016621 | possible_ortholog | 3 retrogenes | |
| Felis catus | ENSFCAG00000002937 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000102931 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005471 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000008633 | possible_ortholog | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000012467 | possible_ortholog | 6 retrogenes | |
| Myotis lucifugus | ENSMLUG00000012680 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000020352 | ortholog_one2one | 7 retrogenes | |
| Monodelphis domestica | ENSMODG00000013511 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002803 | ortholog_one2one | 7 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000582 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000006931 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000008150 | ortholog_one2one | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016991 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000005442 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010254 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014441 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000004923 | ortholog_one2many | 10 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_843 | 66.46 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_990 | 76.58 | 96.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1318 | 65.69 | 61.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1348 | 76.09 | 55.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1453 | 76.36 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_2684 | 78.86 | 74.85 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_2704 | 67.74 | 56.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_pabe_3498 | 75.20 | 75.46 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000007384 retrocopies