RetrogeneDB ID: | retro_pabe_1318 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:82528804..82529103(-) | ||
Located in intron of: | ENSPPYG00000029881 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSPPYG00000007384 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5R9K8] |
Percent Identity: | 65.69 % |
Parental protein coverage: | 61.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TPIFNEYISLVEKYIEEQLLQRIPGFNMAAFTTTLQ-HHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAE |
T..FNE.ISLVEKY.EEQL...IPG.NM.A.T..L..HHKDE.....F.MLLTFTD.L.F.E.FLDY.AE | |
Retrocopy | TTTFNE*ISLVEKYLEEQL-EWIPGLNMVALTKRLH<HHKDEGVDPTFHMLLTFTDCLTFREIFLDYNAE |
Parental | KEGRGLDLSSGLVVTSLCKSSSLPASQNNLRH |
KEG.G.DLSSG.V.T.L.KSS..P..QNNLRH | |
Retrocopy | KEGQGQDLSSGIVLTLLYKSSCMPSFQNNLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 67 .25 RPM |
SRP007412_heart | 0 .00 RPM | 17 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 20 .05 RPM |
SRP007412_liver | 0 .12 RPM | 5 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_2698 |