RetrogeneDB ID: | retro_pabe_990 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:36571493..36571963(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000005283 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSPPYG00000007384 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5R9K8] |
Percent Identity: | 76.58 % |
Parental protein coverage: | 96.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EESFALSFSSTSDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIYTPIFNEYISLVEK |
EE.F...FSS.SDA.FDAVVGYLED.IMD..FQLLQRNF...YY.EFEDTEENKL.YTPIFNEYISL.EK | |
Retrocopy | EEGFIVPFSSDSDAHFDAVVGYLEDVIMDEDFQLLQRNFINNYYQEFEDTEENKLTYTPIFNEYISLAEK |
Parental | YIEEQLLQRIPGFNMAAFTT-TLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLV |
YIEEQLL..I.GF.MA.FTT...QHHKDEV.GDI...LL.FTDFLAFKEMFLD.RAEKEG..LDLS.GLV | |
Retrocopy | YIEEQLLEQILGFTMATFTT<VIQHHKDEVVGDILQTLLKFTDFLAFKEMFLDCRAEKEGQRLDLSRGLV |
Parental | VTSLCKSSSLPASQNNLR |
.TSLCKSSS..ASQN.L. | |
Retrocopy | ETSLCKSSSMTASQNYLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 67 .25 RPM |
SRP007412_heart | 0 .00 RPM | 17 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 20 .05 RPM |
SRP007412_liver | 0 .00 RPM | 5 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1189 |
Pan troglodytes | retro_ptro_816 |
Gorilla gorilla | retro_ggor_927 |