RetrogeneDB ID: | retro_rnor_780 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:10546704..10547096(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Arl2bp | ||
Ensembl ID: | ENSRNOG00000016991 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q4V8C5] |
Percent Identity: | 87.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MDAEFQLLQRSFMDKYYQEFEDTEENKLTYTPIFNEYISLVEKYIEEQLLERIPGFNMAAFTTTLQHHKD |
MD.EFQ.LQR.F.DKYYQE.EDTEENKLTYTPIFNEYISLVEK.IEEQLLE.IPGFNMA.FTT.L.H.KD | |
Retrocopy | MDDEFQVLQRNFLDKYYQELEDTEENKLTYTPIFNEYISLVEKCIEEQLLEHIPGFNMATFTTIL*HRKD |
Parental | EVAGDIFDMLLTFT-DFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSTPASQNNLRH |
EVAGDIFDM.LTFT.DFLAFKE.FLDYRAEKEGRGLDLSS.L.VTSLCKSSS.PASQNNLRH | |
Retrocopy | EVAGDIFDMILTFT<DFLAFKEIFLDYRAEKEGRGLDLSSSLIVTSLCKSSSMPASQNNLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 171 .90 RPM |
SRP017611_kidney | 0 .07 RPM | 81 .16 RPM |
SRP017611_liver | 0 .00 RPM | 8 .94 RPM |