RetrogeneDB ID: | retro_pabe_2704 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:165182749..165183021(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSPPYG00000007384 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5R9K8] |
Percent Identity: | 67.74 % |
Parental protein coverage: | 56.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LVEKYIEEQLLQRIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEG-RGLDLS |
L.......QLL....GFNMAAF.TTLQHHKDEV.GDIFD.L.TF....AFKE.FLDY..EK.G..GLDLS | |
Retrocopy | LMNIFLKDQLLGQMLGFNMAAF-TTLQHHKDEVVGDIFDILFTFAGLIAFKERFLDYKEEKQG<LGLDLS |
Parental | SGLVVTSLCKSSSLPASQNNLRH |
SGL.VTSLCKSSS..ASQN.L.H | |
Retrocopy | SGLLVTSLCKSSSMLASQNDLKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 67 .25 RPM |
SRP007412_heart | 0 .00 RPM | 17 .01 RPM |
SRP007412_kidney | 0 .03 RPM | 20 .05 RPM |
SRP007412_liver | 0 .00 RPM | 5 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3263 |
Pan troglodytes | retro_ptro_2207 |
Gorilla gorilla | retro_ggor_2222 |
Macaca mulatta | retro_mmul_2055 |