RetrogeneDB ID: | retro_sara_190 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_6513:2746..3154(+) | ||
Located in intron of: | ENSSARG00000000968 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSSARG00000005442 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 2 binding protein [Source:HGNC Symbol;Acc:17146] |
Percent Identity: | 51.05 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SSASDAEFDAVVGYLEDIIMD-DEFQLLQRNFMDKYYQEFEDTEENKLTYTPIFNEYISLVEKYIEEQLV |
SSAS.A.....VG..ED.IMD....Q.LQRN......Q.F...EENKLT.T....EY.SLV.KY.EEQL. | |
Retrocopy | SSASKATLNTAVGCWEDVIMDVPGSQILQRNLLGMCDQDF---EENKLTSTSNVYEYLSLVAKYFEEQLQ |
Parental | ERIPGFNMAAFTTNLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRALDL--SSGLVVTSLCK |
.RIP.F.MA.FTT.L.HH.DEVA.D.....L....FL...EMFLDY.A.K.G..LDL..S....V..L.. | |
Retrocopy | ARIPRFSMATFTT-LRHHQDEVAED---RMLISMGFLEATEMFLDYKAMK*G*QLDLWVSGDFIVQNLFG |
Parental | SPT |
.P. | |
Retrocopy | APS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |