RetrogeneDB ID: | retro_hsap_3263 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:162188838..162189322(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254351 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSG00000102931 | ||
Aliases: | ARL2BP, BART, BART1, RP66 | ||
Description: | ADP-ribosylation factor-like 2 binding protein [Source:HGNC Symbol;Acc:17146] |
Percent Identity: | 60.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MDALEGESFALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYLEFEDTEENKLIYTPIFNEYI |
M..LE...F.LSFSS.S...F..V.GYL..I..D.E..LLQRNF.D.Y..EFED...NKL.Y...FNEYI | |
Retrocopy | MNTLEEDNFLLSFSSTSAEQFYSVAGYLYYIMVDNEL*LLQRNFLDIYCQEFEDKLKNKLTYMTTFNEYI |
Parental | SLVEKYIEEQLLQRIPEFNMAA-FTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEG-RGLD |
.LVEKYI..QLL.....FNMAA...T...H.KDE..GDIFD.L.TFT...AFKE.FLD...EK.G..GLD | |
Retrocopy | YLVEKYIKDQLLGQMLGFNMAA<LMTLQHH-KDEAVGDIFDILFTFTGLIAFKE*FLDHKEEKQG<LGLD |
Parental | LSSGLVVTSLCKSSSLPASQNNLRH |
LSSGL.VTSLCKSSS..ASQN.L.H | |
Retrocopy | LSSGLLVTSLCKSSSMLASQNDLKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 60 .53 RPM |
bodymap2_adrenal | 0 .00 RPM | 65 .42 RPM |
bodymap2_brain | 0 .00 RPM | 55 .20 RPM |
bodymap2_breast | 0 .00 RPM | 76 .46 RPM |
bodymap2_colon | 0 .00 RPM | 55 .94 RPM |
bodymap2_heart | 0 .00 RPM | 49 .62 RPM |
bodymap2_kidney | 0 .10 RPM | 64 .87 RPM |
bodymap2_liver | 0 .00 RPM | 17 .39 RPM |
bodymap2_lung | 0 .00 RPM | 35 .13 RPM |
bodymap2_lymph_node | 0 .00 RPM | 52 .12 RPM |
bodymap2_ovary | 0 .00 RPM | 101 .65 RPM |
bodymap2_prostate | 0 .00 RPM | 67 .01 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 26 .72 RPM |
bodymap2_testis | 0 .00 RPM | 94 .36 RPM |
bodymap2_thyroid | 0 .00 RPM | 41 .69 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 75 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2207 |
Gorilla gorilla | retro_ggor_2222 |
Pongo abelii | retro_pabe_2704 |
Macaca mulatta | retro_mmul_2055 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |