RetrogeneDB ID: | retro_cpor_1501 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:47010991..47011474(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSCPOG00000011406 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.05 % |
Parental protein coverage: | 98.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | DALEEENLALSFSSASDAEFDAVVGYLEDIIMDDEFQLLQRNFMDKYYQEFEDTEENKLTYTPIFNEYIS |
.A.EEE..A.S.SSA..AEFD.VVG..E..IMD..FQ.LQ..F.DK.YQEFEDTEENKLTYT.IF.EY.S | |
Retrocopy | EAPEEESFAFSISSATEAEFDTVVGSIENSIMDTKFQTLQIGFTDKCYQEFEDTEENKLTYTTIFKEYLS |
Parental | LVEKYIEEQLLERIPGFSMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSS |
LVEKYIEEQLLERIP..SM.AF.T.L..HKDEV..DIF.MLLTF.D.LAFKEMFLDYRAEKEGRGLD.SS | |
Retrocopy | LVEKYIEEQLLERIPKLSMSAFMTVLKYHKDEVSDDIFEMLLTFMDLLAFKEMFLDYRAEKEGRGLD*SS |
Parental | GLVVTSLCKSSPVPASQNNLR |
.LVVT.LCK.S...A.QN.L. | |
Retrocopy | DLVVTALCKTSA*SAAQNGLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .09 RPM |
SRP017611_liver | 0 .00 RPM | 8 .57 RPM |
SRP040447_lung | 0 .00 RPM | 17 .23 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 8 .40 RPM |