RetrogeneDB ID: | retro_cpor_299 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_12:14412797..14413285(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSCPOG00000011406 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MDALEEENLALSFSSASDAEFD-AVVGYLEDIIMDDEFQLLQRNFMDKYYQEFEDTEENKLTYTPIFNEY |
MDALEE.NLALSFSSASDAEFD..VVGYLEDIIMDDEF.LL.RNFMDKYYQEFEDTEENKLTYTPI.NEY | |
Retrocopy | MDALEEKNLALSFSSASDAEFD<SVVGYLEDIIMDDEFLLL*RNFMDKYYQEFEDTEENKLTYTPICNEY |
Parental | ISLVEKYIEEQLLERIPGFSMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDL |
.SLVEKYIEEQLLERIPGFSMAAFTTTLQHH.DEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDL | |
Retrocopy | VSLVEKYIEEQLLERIPGFSMAAFTTTLQHHEDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDL |
Parental | SSGLVVTSLCKSSPVPASQNNLRH |
SSGLVVTSLCKSSPVPASQNNLRH | |
Retrocopy | SSGLVVTSLCKSSPVPASQNNLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .09 RPM |
SRP017611_liver | 0 .00 RPM | 8 .57 RPM |
SRP040447_lung | 0 .03 RPM | 17 .23 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 8 .40 RPM |