RetrogeneDB ID: | retro_pabe_1348 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16:35451917..35452188(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL2BP | ||
Ensembl ID: | ENSPPYG00000007384 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like protein 2-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5R9K8] |
Percent Identity: | 76.09 % |
Parental protein coverage: | 55.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RNFMDKYYLEFEDTEENKLIYTPIFNEYISLVEKYIEEQLLQRIPGFNMAAFTTTLQHHKDEVAGDIFDM |
RN.MDKYY.EF.D.EENKL...PIFNEYISLV.KY.E.QLL.RIP.FNMA.FT.TLQHHKDEVAGDIF.. | |
Retrocopy | RNIMDKYY*EFADAEENKLNFMPIFNEYISLVGKYVE-QLLERIPRFNMAVFTATLQHHKDEVAGDIFNT |
Parental | LLTFTD-FLAFKEMFLDYRAEK |
.LTF.D.FLAFKE.FL.Y.AEK | |
Retrocopy | PLTFID>FLAFKEIFLEYKAEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 67 .25 RPM |
SRP007412_heart | 0 .00 RPM | 17 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 20 .05 RPM |
SRP007412_liver | 0 .00 RPM | 5 .39 RPM |