Parental gene: | ARL2BP, ENSPTRG00000008150 |
| Aliases: | None |
| Description: | Pan troglodytes ADP-ribosylation factor-like 2 binding protein (ARL2BP), mRNA. [Source:RefSeq mRNA;Acc:NM_001246458] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 16:56326982..56335498(+) |
>ENSPTRG00000008150
ATGGACGCCTTAGAAGGAGAGAGCTTTGCGCTGTCTTTCTCCTCCGCCTCTGATGCAGAATTTGATGCTGTGGTTGGATA
TTTAGAGGACATTATCATGGATGACGAGTTCCAGTTATTACAGAGAAATTTCATGGACAAGTACTACCTGGAGTTTGAAG
ACACAGAAGAGAATAAACTCATCTACACACCTATTTTTAATGAATACATTTCTTTGGTAGAAAAATACATTGAAGAACAG
CTGCTGCAGCGGATTCCTGAGTTCAACATGGCAGCCTTCACCACAACATTACAGCACCATAAGGATGAAGTGGCTGGTGA
CATATTCGACATGCTGCTCACCTTTACAGATTTTCTGGCTTTTAAAGAAATGTTTTTGGACTACAGAGCAGAAAAAGAAG
GCCGAGGACTGGACTTAAGCAGTGGCTTAGTGGTGACTTCATTGTGCAAATCATCTTCTCTGCCAGCTTCCCAGAACAAT
CTGCGGCACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 41 .63 RPM |
| SRP007412_cerebellum | 33 .66 RPM |
| SRP007412_heart | 21 .16 RPM |
| SRP007412_kidney | 43 .57 RPM |
| SRP007412_liver | 19 .80 RPM |
| SRP007412_testis | 99 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000012116 | ortholog_one2many | 9 retrogenes | |
| Cavia porcellus | ENSCPOG00000011406 | ortholog_one2one | 5 retrogenes | |
| Equus caballus | ENSECAG00000016621 | possible_ortholog | 3 retrogenes | |
| Felis catus | ENSFCAG00000002937 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000102931 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005471 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000008633 | possible_ortholog | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000012467 | possible_ortholog | 6 retrogenes | |
| Myotis lucifugus | ENSMLUG00000012680 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000020352 | ortholog_one2one | 7 retrogenes | |
| Monodelphis domestica | ENSMODG00000013511 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002803 | ortholog_one2one | 7 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000582 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000006931 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000007384 | ortholog_one2one | 8 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016991 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000005442 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010254 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014441 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000004923 | ortholog_one2many | 10 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_752 | 77.30 | 99.39 | Please wait, loading  |
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| 2. | retro_ptro_816 | 78.79 | 60.74 | Please wait, loading |
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| 3. | retro_ptro_1231 | 69.44 | 65.64 | Please wait, loading |
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| 4. | retro_ptro_2189 | 80.49 | 74.85 | Please wait, loading |
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| 5. | retro_ptro_2207 | 60.61 | 100.00 | Please wait, loading |
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| 6. | retro_ptro_2910 | 72.58 | 75.46 | Please wait, loading |
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| 7. | retro_ptro_2948 | 78.79 | 60.74 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000008150 retrocopies