RetrogeneDB ID: | retro_dnov_472 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5128:425237..425717(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSDNOG00000011310 | ||
Aliases: | None | ||
Description: | prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD | |
Retrocopy | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
Parental | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE | |
Retrocopy | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
Parental | VDGADDDSQDSDDEKMPDLE |
VDGADDDSQDSDDEKMPDLE | |
Retrocopy | VDGADDDSQDSDDEKMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 4 .08 RPM | 48 .42 RPM |
SRP012922_cerebellum | 4 .81 RPM | 46 .19 RPM |
SRP012922_heart | 1 .39 RPM | 20 .65 RPM |
SRP012922_kidney | 4 .11 RPM | 32 .86 RPM |
SRP012922_liver | 3 .56 RPM | 37 .31 RPM |
SRP012922_lung | 6 .41 RPM | 56 .66 RPM |
SRP012922_quadricep_muscle | 2 .94 RPM | 21 .12 RPM |
SRP012922_spleen | 6 .98 RPM | 56 .43 RPM |