RetrogeneDB ID: | retro_dnov_969 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_128192:2844..3160(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSDNOG00000011310 | ||
Aliases: | None | ||
Description: | prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] |
Percent Identity: | 86.92 % |
Parental protein coverage: | 66.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFS |
LFHCIDPNDSKHKR.DR.ILC.L.KGE.GQS.PRLTKERAK.NWLSVDFNN.KDWE.DSDED.SNFD.FS | |
Retrocopy | LFHCIDPNDSKHKRKDRPILC-L*KGEPGQS*PRLTKERAKRNWLSVDFNNRKDWEGDSDEDISNFDCFS |
Parental | EMMNNMGGDEDVDLPEVDGADDDSQDSDD-EKMPDLE |
EMMNNM.GDEDVDLPEVDGADDDS.DSDD.EKMPDLE | |
Retrocopy | EMMNNMSGDEDVDLPEVDGADDDS*DSDD>EKMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 48 .42 RPM |
SRP012922_cerebellum | 0 .00 RPM | 46 .19 RPM |
SRP012922_heart | 0 .00 RPM | 20 .65 RPM |
SRP012922_kidney | 0 .00 RPM | 32 .86 RPM |
SRP012922_liver | 0 .15 RPM | 37 .31 RPM |
SRP012922_lung | 0 .61 RPM | 56 .66 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 21 .12 RPM |
SRP012922_spleen | 0 .23 RPM | 56 .43 RPM |