RetrogeneDB ID: | retro_mmul_679 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214388405:3987..4346(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4022 | ||
Ensembl ID: | ENSMMUG00000013766 | ||
Aliases: | None | ||
Description: | prostaglandin E synthase 3 [Source:RefSeq peptide;Acc:NP_001248443] |
Percent Identity: | 87.6 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LGGSDNFKHLNEIDLFHCIDPNDSKHKR-TDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDW |
L.GSD.FK.LNE.DLFH.IDPNDSKHK..TDRSI.CCLRKGESGQSWPRLTK.RAKLNWLSVDFNNWKDW | |
Retrocopy | LRGSDTFKYLNEVDLFHSIDPNDSKHKK<TDRSIVCCLRKGESGQSWPRLTKGRAKLNWLSVDFNNWKDW |
Parental | EDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE |
ED.SD.D.SNFDRFSEMMNNMGGDE.VD.PEVDGA.DDSQDSDDEKMPDLE | |
Retrocopy | EDSSD*DRSNFDRFSEMMNNMGGDEAVDSPEVDGAGDDSQDSDDEKMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 96 .14 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 69 .89 RPM |
SRP007412_cerebellum | 0 .06 RPM | 103 .38 RPM |
SRP007412_heart | 0 .00 RPM | 56 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .36 RPM |
SRP007412_liver | 0 .00 RPM | 52 .65 RPM |
SRP007412_testis | 0 .00 RPM | 99 .66 RPM |