RetrogeneDB ID:

retro_nleu_2133

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397331.1:5028231..5028712(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000001466
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PTGES3
Ensembl ID:ENSNLEG00000017454
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2133
ATGCAGCCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTATGTCTTCACTGAATTTTGTGTTGAAGACAGTAAGGATGT
TAATGTAAATTTTGAAAAATCCAAACTTAAATTCAGTTGTCTCAGAGGAAGTGATAATTTTAAGTATTTAAATGAAGTTG
ATCTTTTTCACAGTATTGATCCAAATGATTCCAAGCATTAAAAAAACGGACAGATCAATTGTATGCTATTTACAAAAAGG
AGAATCTGGCCAGTCATGGCCAAGGTTAACAAAAGGAAGGGCAAAGCTCAACTGGCTTAGTGTGGACTTCAATAATTGGA
AAGACTGGGAAGATGATTCAGATGAAGACAGGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACATGGGTGGTGAC
GAGGATGCAGATTCACCAGAAGCAGATGGAGCAGGTGATGATTCACAAGACAGTGATGATGAAAAAATGCCAGATCGGGA
G

ORF - retro_nleu_2133 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.82 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKH-KRT
MQPASAKWYDRRDYVF.EFCVEDSKDVNVNFEKSKL.FSCL.GSDNFK.LNE.DLFH.IDPNDSKH.K.T
RetrocopyMQPASAKWYDRRDYVFTEFCVEDSKDVNVNFEKSKLKFSCLRGSDNFKYLNEVDLFHSIDPNDSKH>KKT
ParentalDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLP
DRSI.C.L.KGESGQSWPRLTK.RAKLNWLSVDFNNWKDWEDDSDED.SNFDRFSEMMNNMGGDED.D.P
RetrocopyDRSIVCYLQKGESGQSWPRLTKGRAKLNWLSVDFNNWKDWEDDSDEDRSNFDRFSEMMNNMGGDEDADSP
ParentalEVDGADDDSQDSDDEKMPDLE
E.DGA.DDSQDSDDEKMPD.E
RetrocopyEADGAGDDSQDSDDEKMPDRE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2133 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 86 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000041721 retrocopy
Bos taurus ENSBTAG000000179672 retrocopies
Choloepus hoffmanni ENSCHOG000000065141 retrocopy
Callithrix jacchus ENSCJAG000000107246 retrocopies
Cavia porcellus ENSCPOG000000000572 retrocopies
Dasypus novemcinctus ENSDNOG000000113104 retrocopies
Dipodomys ordii ENSDORG000000009642 retrocopies
Echinops telfairi ENSETEG000000000241 retrocopy
Homo sapiens ENSG000001109585 retrocopies
Gorilla gorilla ENSGGOG000000279575 retrocopies
Loxodonta africana ENSLAFG000000082681 retrocopy
Macropus eugenii ENSMEUG000000012881 retrocopy
Myotis lucifugus ENSMLUG000000159273 retrocopies
Macaca mulatta ENSMMUG000000137666 retrocopies
Mus musculus ENSMUSG000000710722 retrocopies
Nomascus leucogenys ENSNLEG00000017454 3 retrocopies
retro_nleu_2133 , retro_nleu_2486, retro_nleu_446,
Otolemur garnettii ENSOGAG000000286673 retrocopies
Procavia capensis ENSPCAG000000077792 retrocopies
Pongo abelii ENSPPYG000000046694 retrocopies
Pan troglodytes ENSPTRG000000051088 retrocopies
Rattus norvegicus ENSRNOG000000026425 retrocopies
Sorex araneus ENSSARG000000077512 retrocopies
Tupaia belangeri ENSTBEG0000000299415 retrocopies
Tarsius syrichta ENSTSYG000000096222 retrocopies



Copyright © RetrogeneDB 2014-2017