RetrogeneDB ID: | retro_rnor_1011 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:78080211..78080608(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptges3 | ||
Ensembl ID: | ENSRNOG00000002642 | ||
Aliases: | Ptges3, RGD1561913 | ||
Description: | Prostaglandin E synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:P83868] |
Percent Identity: | 62.69 % |
Parental protein coverage: | 81.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EKSKLTFSCLGGSDNFKHLNEIDLF-HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKNRNKLNWLS |
.KSKL.F.CL......K.LN..DLF.HCIDPNDS.H.R..RSIL.CL.K.ESGQ.WPRLTK.R...N.LS | |
Retrocopy | KKSKLIFGCLEVIT*IKLLNKVDLF>HCIDPNDSRHERMNRSILFCLQK-ESGQLWPRLTKKRARVN*LS |
Parental | VDFNNWKDWEDDSDEDMSNFDRFSEM---MDHMGGDEDVDLPEVDGADDDSQDSDD-EKMPDLE |
..FNNWKDWEDDSD.DMSNFD..SE....MDH.........PEVD.A.DDSQDSDD....PDLE | |
Retrocopy | MGFNNWKDWEDDSDVDMSNFDHLSEKMDHMDHIAMMLI*IFPEVDEAEDDSQDSDDXXXXPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 71 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 93 .09 RPM |
SRP017611_liver | 0 .00 RPM | 55 .94 RPM |