RetrogeneDB ID: | retro_mmus_2757 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:85843979..85844459(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000040078 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptges3 | ||
Ensembl ID: | ENSMUSG00000071072 | ||
Aliases: | Ptges3, 5730442A20Rik, Ptges, Tebp, cPGES, p23, sid3177 | ||
Description: | prostaglandin E synthase 3 (cytosolic) [Source:MGI Symbol;Acc:MGI:1929282] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD | |
Retrocopy | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
Parental | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMDHMGGDEDVDLPE |
RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMDHMGGDEDVDLPE | |
Retrocopy | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMDHMGGDEDVDLPE |
Parental | VDGADDDSQDSDDEKMPDLE |
VDGADDDSQDSDDEKMPDLE | |
Retrocopy | VDGADDDSQDSDDEKMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .33 RPM | 35 .91 RPM |
SRP007412_cerebellum | 1 .69 RPM | 29 .92 RPM |
SRP007412_heart | 1 .06 RPM | 21 .36 RPM |
SRP007412_kidney | 2 .44 RPM | 37 .94 RPM |
SRP007412_liver | 2 .08 RPM | 40 .25 RPM |
SRP007412_testis | 3 .61 RPM | 59 .87 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
CX222947 | 85844141 | 85844282 | 97.9 | 141 | 0 | 140 |