Parental gene: | PTGES3, ENSCJAG00000010724 |
| Aliases: | None |
| Description: | prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:45490159..45514691(-) |
>ENSCJAG00000010724
ATGTTAAACTTTAGGCAACCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTATGTCTTCATTGAATTTTGTGTTGAAGA
CAGTAAGGATGTTAATGTAAATTTTGAAAAATCCAAACTTACATTCAGTTGTCTTGGAGGAAGTGATAATTTTAAGCATT
TAAATGAAATTGATCTTTTTCACTGTATTGATCCAAATGATTCCAAGCATAAAAGAACGGACAGATCAATTTTATGTTGT
TTACGAAAAGGAGAATCTGGCCAGTCATGGCCAAGGTTAACAAAAGAAAGGGCAAAGCTTAATTGGCTTAGTGTGGACTT
CAATAATTGGAAAGACTGGGAAGACGATTCAGATGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACA
TGGGTGGTGATGAGGATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGTAAGTCTAAAAGTTTTTTTTTCTGTTTAC
TTTTATACTATTAAATAG
ATGTTAAACTTTAGGCAACCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTATGTCTTCATTGAATTTTGTGTTGAAGA
CAGTAAGGATGTTAATGTAAATTTTGAAAAATCCAAACTTACATTCAGTTGTCTTGGAGGAAGTGATAATTTTAAGCATT
TAAATGAAATTGATCTTTTTCACTGTATTGATCCAAATGATTCCAAGCATAAAAGAACGGACAGATCAATTTTATGTTGT
TTACGAAAAGGAGAATCTGGCCAGTCATGGCCAAGGTTAACAAAAGAAAGGGCAAAGCTTAATTGGCTTAGTGTGGACTT
CAATAATTGGAAAGACTGGGAAGACGATTCAGATGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACA
TGGGTGGTGATGAGGATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGTAAGTCTAAAAGTTTTTTTTTCTGTTTAC
TTTTATACTATTAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 59 .33 RPM |
| SRP051959_skeletal_muscle | 53 .13 RPM |
| SRP051959_lymph_node | 57 .97 RPM |
| SRP051959_lung | 56 .77 RPM |
| SRP051959_liver | 54 .30 RPM |
| SRP051959_kidney | 56 .75 RPM |
| SRP051959_heart | 52 .73 RPM |
| SRP051959_colon | 57 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004172 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000017967 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000006514 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000000057 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000011310 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000000964 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000000024 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000110958 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027957 | ortholog_one2many | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000008268 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000001288 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015927 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000013766 | ortholog_one2one | 6 retrogenes | |
| Mus musculus | ENSMUSG00000071072 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017454 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000028667 | ortholog_one2one | 3 retrogenes | |
| Procavia capensis | ENSPCAG00000007779 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004669 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000005108 | ortholog_one2one | 8 retrogenes | |
| Rattus norvegicus | ENSRNOG00000002642 | ortholog_one2many | 5 retrogenes | |
| Sorex araneus | ENSSARG00000007751 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000002994 | ortholog_one2one | 15 retrogenes | |
| Tarsius syrichta | ENSTSYG00000009622 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_473 | 72.67 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_942 | 76.29 | 69.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1001 | 71.68 | 70.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1304 | 83.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2122 | 80.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3826 | 65.35 | 61.25 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010724 retrocopies