RetrogeneDB ID: | retro_ggor_546 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:122062475..122062815(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000110958 | ||
Ensembl ID: | ENSGGOG00000027957 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.2 % |
Parental protein coverage: | 75.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | CLGGS-DNFKHLNEID-LFHCIDPNDSKHKRTDRSILCCLRKGESGQSWP-RLTKERAKLNWLSVDFNNW |
CLG.S....KHLNEI..LFH..DPN.SKHKRTD.S.LC.L.KGESGQSWP....K.RAK..WLSVD..NW | |
Retrocopy | CLGES>NHCKHLNEII<LFHWVDPNVSKHKRTDGSTLC-L*KGESGQSWP<KINK-RAKHVWLSVDSHNW |
Parental | KDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDD-SQDSDDEKMPDLE |
K...DD.D..M.N.D.FSE...NMGGD.DV.LPEV.G.DDD.S.D..D.K.P.LE | |
Retrocopy | KEKKDDLD--MFNSDHFSETI-NMGGDKDVYLPEVQGTDDD<SND--DFKRPNLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 31 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 24 .11 RPM |
SRP007412_heart | 0 .00 RPM | 4 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .04 RPM |
SRP007412_liver | 0 .00 RPM | 23 .90 RPM |
SRP007412_testis | 0 .00 RPM | 68 .89 RPM |