RetrogeneDB ID: | retro_hsap_2084 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:26045337..26045816(+) | ||
Located in intron of: | ENSG00000143970 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000217643 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSG00000110958 | ||
Aliases: | PTGES3, P23, TEBP, cPGES | ||
Description: | prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] |
Percent Identity: | 83.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKL-TFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRT |
MQPASAKWY.RRDYVF.EFC.E.SKDV.VNFEKSKL.TFSCL.GSDNFK.LNE.DLFH.IDPNDSKH... | |
Retrocopy | MQPASAKWYYRRDYVFTEFC-EHSKDVHVNFEKSKL>TFSCLRGSDNFKYLNEVDLFHSIDPNDSKHXXX |
Parental | -DRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDL |
.DRSI.CCLRKGESGQS.PRLTK.RAKLNWLSVDF.NWK.WED.SDED.SNFDRFSEMMNNMGG.ED.D. | |
Retrocopy | >DRSIVCCLRKGESGQS*PRLTKGRAKLNWLSVDFSNWKHWEDGSDEDRSNFDRFSEMMNNMGGEEDAD* |
Parental | PEVDGADDDSQDSDDEKMPDLE |
PEVDGA.DDSQDSDDEKMPD.E | |
Retrocopy | PEVDGAGDDSQDSDDEKMPDRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .42 RPM | 262 .75 RPM |
bodymap2_adrenal | 0 .10 RPM | 188 .01 RPM |
bodymap2_brain | 2 .11 RPM | 311 .71 RPM |
bodymap2_breast | 0 .88 RPM | 243 .62 RPM |
bodymap2_colon | 0 .06 RPM | 623 .37 RPM |
bodymap2_heart | 0 .15 RPM | 122 .16 RPM |
bodymap2_kidney | 0 .39 RPM | 328 .32 RPM |
bodymap2_liver | 0 .40 RPM | 143 .96 RPM |
bodymap2_lung | 0 .04 RPM | 366 .39 RPM |
bodymap2_lymph_node | 1 .06 RPM | 390 .73 RPM |
bodymap2_ovary | 0 .56 RPM | 579 .62 RPM |
bodymap2_prostate | 0 .10 RPM | 499 .81 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 258 .56 RPM |
bodymap2_testis | 0 .74 RPM | 381 .27 RPM |
bodymap2_thyroid | 0 .90 RPM | 402 .67 RPM |
bodymap2_white_blood_cells | 0 .39 RPM | 314 .81 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CFW | POLR2A | 2:26045032..26045462 |
ENCFF002CFX | POLR2A | 2:26045148..26045298 |
ENCFF002CHO | POLR2A | 2:26045079..26045406 |
ENCFF002CQK | POLR2A | 2:26044975..26045465 |
ENCFF002CQO | POLR2A | 2:26044967..26045497 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_121448 | 643 libraries | 366 libraries | 334 libraries | 268 libraries | 218 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1533 |
Gorilla gorilla | retro_ggor_111 |
Pongo abelii | retro_pabe_2010 |
Macaca mulatta | retro_mmul_978 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .26 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .15 RPM |
CEU_NA12400 | 0 .49 RPM |
CEU_NA12751 | 0 .58 RPM |
CEU_NA12760 | 0 .36 RPM |
CEU_NA12827 | 0 .42 RPM |
CEU_NA12872 | 0 .27 RPM |
CEU_NA12873 | 0 .19 RPM |
FIN_HG00183 | 0 .38 RPM |
FIN_HG00277 | 0 .78 RPM |
FIN_HG00315 | 0 .80 RPM |
FIN_HG00321 | 0 .94 RPM |
FIN_HG00328 | 0 .38 RPM |
FIN_HG00338 | 0 .55 RPM |
FIN_HG00349 | 0 .65 RPM |
FIN_HG00375 | 0 .90 RPM |
FIN_HG00377 | 0 .23 RPM |
FIN_HG00378 | 0 .49 RPM |
GBR_HG00099 | 0 .64 RPM |
GBR_HG00111 | 0 .47 RPM |
GBR_HG00114 | 0 .39 RPM |
GBR_HG00119 | 0 .67 RPM |
GBR_HG00131 | 0 .55 RPM |
GBR_HG00133 | 0 .92 RPM |
GBR_HG00134 | 0 .35 RPM |
GBR_HG00137 | 0 .85 RPM |
GBR_HG00142 | 0 .58 RPM |
GBR_HG00143 | 0 .29 RPM |
TSI_NA20512 | 0 .20 RPM |
TSI_NA20513 | 0 .58 RPM |
TSI_NA20518 | 0 .67 RPM |
TSI_NA20532 | 0 .17 RPM |
TSI_NA20538 | 0 .28 RPM |
TSI_NA20756 | 0 .32 RPM |
TSI_NA20765 | 0 .17 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .31 RPM |
TSI_NA20798 | 0 .50 RPM |
YRI_NA18870 | 0 .24 RPM |
YRI_NA18907 | 0 .10 RPM |
YRI_NA18916 | 0 .19 RPM |
YRI_NA19093 | 0 .49 RPM |
YRI_NA19099 | 0 .32 RPM |
YRI_NA19114 | 0 .31 RPM |
YRI_NA19118 | 0 .33 RPM |
YRI_NA19213 | 0 .48 RPM |
YRI_NA19214 | 0 .39 RPM |
YRI_NA19223 | 0 .64 RPM |