RetrogeneDB ID: | retro_hsap_417 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:89569970..89570450(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000234518 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSG00000110958 | ||
Aliases: | PTGES3, P23, TEBP, cPGES | ||
Description: | prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] |
Percent Identity: | 97.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
MQPASAKWYD.R.YVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID.NDSKHKRTD | |
Retrocopy | MQPASAKWYDQRHYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDTNDSKHKRTD |
Parental | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE | |
Retrocopy | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
Parental | VDGADDDSQDSDDEKMPDLE |
VDGADDDSQDSDDEKMPDL. | |
Retrocopy | VDGADDDSQDSDDEKMPDLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 4 .23 RPM | 262 .75 RPM |
bodymap2_adrenal | 3 .83 RPM | 188 .01 RPM |
bodymap2_brain | 1 .38 RPM | 311 .71 RPM |
bodymap2_breast | 4 .86 RPM | 243 .62 RPM |
bodymap2_colon | 7 .02 RPM | 623 .37 RPM |
bodymap2_heart | 0 .83 RPM | 122 .16 RPM |
bodymap2_kidney | 2 .89 RPM | 328 .32 RPM |
bodymap2_liver | 1 .12 RPM | 143 .96 RPM |
bodymap2_lung | 6 .38 RPM | 366 .39 RPM |
bodymap2_lymph_node | 6 .72 RPM | 390 .73 RPM |
bodymap2_ovary | 9 .91 RPM | 579 .62 RPM |
bodymap2_prostate | 7 .14 RPM | 499 .81 RPM |
bodymap2_skeletal_muscle | 2 .86 RPM | 258 .56 RPM |
bodymap2_testis | 3 .73 RPM | 381 .27 RPM |
bodymap2_thyroid | 5 .03 RPM | 402 .67 RPM |
bodymap2_white_blood_cells | 4 .61 RPM | 314 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_319 |
Pongo abelii | retro_pabe_5 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 5 .41 RPM |
CEU_NA11843 | 3 .64 RPM |
CEU_NA11930 | 4 .50 RPM |
CEU_NA12004 | 4 .86 RPM |
CEU_NA12400 | 3 .79 RPM |
CEU_NA12751 | 4 .44 RPM |
CEU_NA12760 | 4 .76 RPM |
CEU_NA12827 | 4 .72 RPM |
CEU_NA12872 | 5 .47 RPM |
CEU_NA12873 | 5 .65 RPM |
FIN_HG00183 | 5 .02 RPM |
FIN_HG00277 | 4 .81 RPM |
FIN_HG00315 | 5 .69 RPM |
FIN_HG00321 | 5 .95 RPM |
FIN_HG00328 | 5 .30 RPM |
FIN_HG00338 | 5 .24 RPM |
FIN_HG00349 | 5 .35 RPM |
FIN_HG00375 | 4 .08 RPM |
FIN_HG00377 | 4 .74 RPM |
FIN_HG00378 | 6 .18 RPM |
GBR_HG00099 | 6 .19 RPM |
GBR_HG00111 | 5 .31 RPM |
GBR_HG00114 | 5 .21 RPM |
GBR_HG00119 | 5 .22 RPM |
GBR_HG00131 | 4 .57 RPM |
GBR_HG00133 | 4 .44 RPM |
GBR_HG00134 | 4 .76 RPM |
GBR_HG00137 | 3 .35 RPM |
GBR_HG00142 | 4 .42 RPM |
GBR_HG00143 | 6 .00 RPM |
TSI_NA20512 | 4 .78 RPM |
TSI_NA20513 | 3 .75 RPM |
TSI_NA20518 | 4 .91 RPM |
TSI_NA20532 | 4 .90 RPM |
TSI_NA20538 | 5 .67 RPM |
TSI_NA20756 | 5 .35 RPM |
TSI_NA20765 | 5 .80 RPM |
TSI_NA20771 | 4 .91 RPM |
TSI_NA20786 | 5 .52 RPM |
TSI_NA20798 | 6 .58 RPM |
YRI_NA18870 | 4 .67 RPM |
YRI_NA18907 | 4 .44 RPM |
YRI_NA18916 | 4 .95 RPM |
YRI_NA19093 | 4 .37 RPM |
YRI_NA19099 | 6 .31 RPM |
YRI_NA19114 | 4 .77 RPM |
YRI_NA19118 | 4 .47 RPM |
YRI_NA19213 | 5 .17 RPM |
YRI_NA19214 | 4 .82 RPM |
YRI_NA19223 | 4 .76 RPM |