RetrogeneDB ID: | retro_mmul_1054 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:12246935..12247391(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4022 | ||
Ensembl ID: | ENSMMUG00000013766 | ||
Aliases: | None | ||
Description: | prostaglandin E synthase 3 [Source:RefSeq peptide;Acc:NP_001248443] |
Percent Identity: | 74.84 % |
Parental protein coverage: | 94.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRK |
.RRD.VF.EF.VEDSK...V.FEKSK.TFSCLGG.D.FKHLNEIDLFHCIDPNDS..KR.DRSILCCL.K | |
Retrocopy | NRRDHVFTEFSVEDSKAAHVHFEKSKRTFSCLGGNDHFKHLNEIDLFHCIDPNDSEPKRMDRSILCCL*K |
Parental | GESG-QSWPRLTK--ERAKLNWLSVDFNNWKDW-EDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGAD |
GESG.QSWPRLT.....AKLNWLSVDFNNWKD...D....DMSNFD.FSE..N.MGG..DVDLPEVDGAD | |
Retrocopy | GESG<QSWPRLTNXXXXAKLNWLSVDFNNWKDG>DDSDE-DMSNFDHFSEVINSMGGGVDVDLPEVDGAD |
Parental | DDSQDSDDEKMPDLE |
DDS..SDDEKM..L. | |
Retrocopy | DDS*ESDDEKMLELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 96 .14 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 69 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 103 .38 RPM |
SRP007412_heart | 0 .00 RPM | 56 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .36 RPM |
SRP007412_liver | 0 .00 RPM | 52 .65 RPM |
SRP007412_testis | 0 .00 RPM | 99 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_942 |